Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

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Documentation for package ‘M3Drop’ version 1.2.0

Help Pages

bg__fit_logistic Fit functions to the dropouts vs expression distribution.
bg__fit_MM Fit functions to the dropouts vs expression distribution.
bg__fit_ZIFA Fit functions to the dropouts vs expression distribution.
BrenneckeGetVariableGenes Identify Highly Variable Genes
M3DropCleanData Filter Expression Data
M3DropDifferentialExpression Differentially Expressed Genes.
M3DropDropoutModels Fit functions to the dropouts vs expression distribution.
M3DropExpressionHeatmap Plot Heatmap of Gene Expression
M3DropGetExtremes Get outliers from MM curve.
M3DropGetHeatmapCellClusters Extracts cell clusters from heatmap output
M3DropGetMarkers Identify marker genes
M3DropTestShift Test for horizontal shift.
M3DropThreeSetVenn Three-way Venn Diagram