Analyze isomiRs and miRNAs from small RNA-seq

Documentation for package ‘isomiRs’ version 1.0.3

counts	Accessors for the count matrix of a IsomirDataSeq object.
counts-method	Accessors for the count matrix of a IsomirDataSeq object.
counts.IsomirDataSeq	Accessors for the count matrix of a IsomirDataSeq object.
counts<--method	Accessors for the count matrix of a IsomirDataSeq object.
isoCounts	Create count matrix with different summarizing options
isoDE	Differential expression analysis with DESeq2
IsomirDataSeq	Class that contains all isomiRs annotation for all samples
IsomirDataSeq-class	Class that contains all isomiRs annotation for all samples
IsomirDataSeqFromFiles	'IsomirDataSeqFromFiles' loads miRNA annotation from seqbuster tool
isoNorm	Normalize count matrix
isoPlot	Plot the amount of isomiRs in different samples
isoPlotPosition	Plot nucleotides changes at a given position
isoPLSDA	Partial Least Squares Discriminant Analysis for 'IsomirDataSeq'
isoPLSDAplot	Plot components from isoPLSDA analysis (pairs plot)
isoSelect	Method to select specific miRNAs from an IsomirDataSeq object.
isoSelect-method	Method to select specific miRNAs from an IsomirDataSeq object.
isoSelect.IsomirDataSeq	Method to select specific miRNAs from an IsomirDataSeq object.
isoTop	Heatmap of the top expressed isomiRs
mirData	Example of IsomirDataSeq with human brain miRNA counts data