| iSeq1 | Bayesian modeling of ChIP-seq data through hidden Ising models |
| iSeq2 | Bayesian hierarchical modeling of ChIP-seq data through hidden Ising models |
| mergetag | Aggregate sequence tags into dynamic genomic windows/bins and count the number of tags in the windows/bins. |
| nrsf | nrsf data |
| peakreg | Call and merge enriched genomic windows/bins. |
| plotreg | A function used to plot enriched genomic regions |