A B C D E F G I K L M P Q R S misc
| AddMeta | AddMeta |
| AddMeta-method | AddMeta |
| BIC_LTMG | BIC_LTMG BIC_LTMG |
| BIC_ZIMG | BIC_ZIMG fits different model BIC_ZIMG fits different model |
| CalBinaryMultiSignal | CalBinaryMultiSignal |
| CalBinaryMultiSignal-method | CalBinaryMultiSignal |
| CalBinarySingleSignal | CalBinarySingleSignal |
| CalBinarySingleSignal-method | CalBinarySingleSignal |
| CLUSTERING | Packaging clustering method This function is used for choosing clustering method |
| CreateIRISFGMObject | CreateIRISFGMObject |
| DimReduce-class | Create DimReduce object |
| DotPlotPathway | DotPlotPathway |
| DotPlotPathway-method | DotPlotPathway |
| example_object | Example object. |
| FindClassBasedOnMC | FindClassBasedOnMC |
| FindClassBasedOnMC-method | FindClassBasedOnMC |
| FindGlobalMarkers | FindGlobalMarkers |
| FindGlobalMarkers-method | FindGlobalMarkers |
| FindMarker | FindMarker |
| FindMarker-method | FindMarker |
| Fit_LTMG | Fit_LTMG Fit_LTMG |
| GetBinaryMultiSignal | GetBinaryMultiSignal |
| GetBinaryMultiSignal-method | GetBinaryMultiSignal |
| GetBinarySingleSignal | GetBinarySingleSignal |
| GetBinarySingleSignal-method | GetBinarySingleSignal |
| GetLTMGmatrix | GetLTMGmatrix |
| GetLTMGmatrix-method | GetLTMGmatrix |
| getMeta | getMeta |
| getMeta-method | getMeta |
| Global_Zcut | Global_Zcut create Zcut Global_Zcut create Zcut |
| GRAPH | generate graph |
| InverseMillsRatio | Title Title |
| IRISFGM-class | IRISFGM |
| KS_LTMG | KS_LTMG KS_LTMG |
| KS_ZIMG | KS_ZIMG KS_ZIMG |
| LogSeparateKRpkmNew | Title Title |
| LogSeparateKRpkmNewLR | LogSeparateKRpkmNewLR |
| LTMG | LTMG LTMG |
| MCL | MCL clustering MCL clustering |
| MINUS | MINUS MINUS |
| MIN_return | MIN_return MIN_return |
| Pi_Zj_Zcut_new | Pi_Zj_Zcut_new Pi_Zj_Zcut_new |
| PlotDimension | PlotDimension |
| PlotDimension-method | PlotDimension |
| PlotHeatmap | PlotHeatmap |
| PlotHeatmap-method | PlotHeatmap |
| PlotMarkerHeatmap | PlotMarkerHeatmap will visualize global marker This function will generate global marker gene heatmap |
| PlotMeta | PlotMeta |
| PlotMeta-method | PlotMeta |
| PlotModuleNetwork | PlotModuleNetwork |
| PlotModuleNetwork-method | PlotModuleNetwork |
| PlotNetwork | PlotNetwork |
| PlotNetwork-method | PlotNetwork |
| ProcessData | ProcessData |
| ProcessData-method | ProcessData |
| Pure_CDF | Pure_CDF Pure_CDF |
| qubic | qubic |
| ReadFrom10X_folder | ReadFrom10X_folder |
| ReadFrom10X_folder-method | ReadFrom10X_folder |
| ReadFrom10X_h5 | ReadFrom10X_h5 |
| ReadFrom10X_h5-method | ReadFrom10X_h5 |
| RunBicluster | RunBicluster |
| RunBicluster-method | RunBicluster |
| RunClassification | RunClassification |
| RunClassification-method | RunClassification |
| RunDimensionReduction | RunDimensionReduction |
| RunDimensionReduction-method | RunDimensionReduction |
| RunDiscretization | RunDiscretization |
| RunDiscretization-method | RunDiscretization |
| RunLTMG | RunLTMG |
| RunLTMG-method | RunLTMG |
| RunPathway | RunPathway |
| RunPathway-method | RunPathway |
| SC | spectral Clustering method spectral Clustering method |
| SeparateKRpkmNew | SeparateKRpkmNew SeparateKRpkmNew |
| SeparateKRpkmNew2 | SeparateKRpkmNew2 SeparateKRpkmNew2 |
| SeparateKRpkmNewLR | SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes Calcuate the LTMG_2LR for some genes |
| SeparateKRpkmNewLRPlus | SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes Calcuate the LTMG_2LR for some genes |
| SeparateKRpkmNewp | Title Title |
| State_return | State_return State_return |
| SubsetData | SubsetData |
| SubsetData-method | SubsetData |
| .addMeta | AddMeta |
| .CalBinaryMultiSignal | CalBinaryMultiSignal |
| .CalBinarySingleSignal | CalBinarySingleSignal |
| .dotPlotPathway | DotPlotPathway |
| .final | FindClassBasedOnMC |
| .findglobalMarkers | FindGlobalMarkers |
| .findMarker | FindMarker |
| .generateNetObject | GenerateNetObject Generate Net Object for the network use. |
| .GetBinaryMultiSignal | GetBinaryMultiSignal |
| .GetBinarySingleSignal | GetBinarySingleSignal |
| .getBlock | getblock function |
| .GetLTMGmatrix | GetLTMGmatrix |
| .getmeta | getMeta |
| .IDConvert | convert ID convert ID |
| .plotDimension | PlotDimension |
| .plotHeatmap | PlotHeatmap |
| .plotMeta | PlotMeta |
| .plotmodulenetwork | PlotModuleNetwork |
| .processData | ProcessData |
| .runBicluster | RunBicluster |
| .runBiclusterBaseOnDiscretization | Run Discretization Generate temporal discretized file |
| .runBiclusterBaseOnLTMG | RunBicusterBaseOnLTMG |
| .runClassification | RunClassification |
| .runDimensionReduction | RunDimensionReduction |
| .runDiscretization | RunDiscretization |
| .RunGO | RunGO RunGO |
| .RunKEGG | RunKEGG RunKEGG |
| .RunLTMG | RunLTMG |
| .runPathway | RunPathway |
| .separateBic | separateBic separate biclusters |
| .subset_data | SubsetData |