| IPPD-package | Peak pattern deconvolution for Protein Mass Spectrometry by non-negative ls/lad template matching |
| analyzeLCMS | Functionality for LC-MS data |
| calculatebasis.emg | Internal functions |
| calculatebasis.gaussian | Internal functions |
| calculatedenoisingbasis.emg | Internal functions |
| calculatedenoisingbasis.gaussian | Internal functions |
| dalpha | Internal functions |
| determinemode | Internal functions |
| dmu | Internal functions |
| dsigma | Internal functions |
| EMG | Internal functions |
| erfc | Internal functions |
| examples_boxes | Internal functions |
| fit.combine | Internal functions |
| fit.EMG | Internal functions |
| fit.gauss | Internal functions |
| fitModelParameters | Peak parameter estimation |
| fitModelParameters-method | Peak parameter estimation |
| fitModelParameters-methods | Peak parameter estimation |
| formulacoef2function | Internal functions |
| gaussfun | Internal functions |
| getpeakheights | Internal functions |
| getPeaklist | Peak pattern extraction by non-negative ls/lad template matching |
| getPeaklist-method | Peak pattern extraction by non-negative ls/lad template matching |
| getPeaklist-methods | Peak pattern extraction by non-negative ls/lad template matching |
| grad | Internal functions |
| grad.combine | Internal functions |
| gridsearch | Internal functions |
| intermediate.gaussian | Internal functions |
| intermediateemg | Internal functions |
| linesearch | Internal functions |
| linesearchlad | Internal functions |
| localnoise | Internal functions |
| modelfit | "Modelfit" |
| modelfit-class | "Modelfit" |
| myo500 | Myoglobine dataset |
| new.mzXML | Import of data in mzXML format |
| nnladlogbarrier | Internal functions |
| nnlslogbarrier | Internal functions |
| objective | Internal functions |
| objective.combine | Internal functions |
| P1 | Internal functions |
| P2 | Internal functions |
| P3 | Internal functions |
| P3prime | Internal functions |
| peakdetect | Internal functions |
| peaklist | "Peaklist" |
| peaklist-class | "Peaklist" |
| postprocess.emg | Internal functions |
| postprocess.gaussian | Internal functions |
| read.mzXML | Import of data in mzXML format |
| show-method | "Modelfit" |
| show-method | "Peaklist" |
| simplepeakdetect | Internal functions |
| sweepline | Sweep line scheme to process LC-MS data |
| tableaveragine | Internal functions |
| threshold | "Peaklist" |
| threshold-method | "Peaklist" |
| toyspectrum | Simulated protein mass spectrum |
| toyspectrumsolution | Simulated protein mass spectrum |
| visualize | "Peaklist" |
| visualize-method | "Modelfit" |
| visualize-method | "Peaklist" |