A B C D E F I L M N P R S T U W
| immunoClust-package | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry |
| addLevel<- | Acessors and Methods for immunoMeta Objects |
| addLevel<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| aposteriori | Generic function definitions in immunoClust |
| aposteriori-method | Acessors and Methods for immunoClust Objects |
| aposteriori-method | Acessors and Methods for immunoMeta Objects |
| aposteriori.immunoClust | Acessors and Methods for immunoClust Objects |
| aposteriori.immunoMeta | Acessors and Methods for immunoMeta Objects |
| bhattacharyya.coeff | Bhattacharyya Distance, Coefficient and Probability |
| bhattacharyya.dist | Bhattacharyya Distance, Coefficient and Probability |
| bhattacharyya.prob | Bhattacharyya Distance, Coefficient and Probability |
| cell.Classify | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
| cell.classifyAll | Clustering of Cell-events in the immunoClust-pipeline |
| cell.ClustData | Model Based Clustering of Data for a pre-defined Number of Clusters |
| cell.EM | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
| cell.Estimation | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
| cell.FitModel | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
| cell.hclust | Hierarchical Model Based Clustering of Cell-events in the immunoClust-pipeline |
| cell.InitialModel | Clustering of Cell-events in the immunoClust-pipeline |
| cell.MajorIterationLoop | Clustering of Cell-events in the immunoClust-pipeline |
| cell.MajorIterationTrans | Clustering of Cell-events in the immunoClust-pipeline |
| cell.ME | immunoClust EM-iteration on Cell-events given initial Cluster Membership Assignment |
| cell.process | Clustering of Cell-events in the immunoClust-pipeline |
| cell.SubClustering | immunoClust Model Refinement Step in iterative Cell-events Clustering |
| cell.TestSubCluster | immunoClust Model Refinement Step in iterative Cell-events Clustering |
| cells | Acessors and Methods for immunoClust Objects |
| cells-method | Acessors and Methods for immunoClust Objects |
| classified | Acessors and Methods for immunoMeta Objects |
| classified-method | Acessors and Methods for immunoMeta Objects |
| classified.immunoMeta | Acessors and Methods for immunoMeta Objects |
| clusterCoeff | Generic function definitions in immunoClust |
| clusterCoeff-method | Acessors and Methods for immunoMeta Objects |
| clusterDist | Generic function definitions in immunoClust |
| clusterDist-method | Acessors and Methods for immunoMeta Objects |
| clusterProb | Generic function definitions in immunoClust |
| clusterProb-method | Acessors and Methods for immunoMeta Objects |
| clusters | Acessors and Methods for immunoMeta Objects |
| clusters-method | Acessors and Methods for immunoMeta Objects |
| clusters.immunoMeta | Acessors and Methods for immunoMeta Objects |
| dat.exp | immunoClust Meta-clustering Sample |
| dat.fcs | immunoClust Cell-clustering Sample |
| dat.meta | immunoClust Meta-clustering Results Sample |
| datSplom | Scatterplot Matrix of immunoClust Clustering Results |
| desc | Acessors and Methods for immunoMeta Objects |
| desc-method | Acessors and Methods for immunoMeta Objects |
| desc.immunoMeta | Acessors and Methods for immunoMeta Objects |
| desc<- | Acessors and Methods for immunoMeta Objects |
| desc<--method | Acessors and Methods for immunoMeta Objects |
| desc<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| descFull | Acessors and Methods for immunoMeta Objects |
| descFull-method | Acessors and Methods for immunoMeta Objects |
| descFull.immunoMeta | Acessors and Methods for immunoMeta Objects |
| events | Acessors and Methods for immunoMeta Objects |
| events-method | Acessors and Methods for immunoClust Objects |
| events-method | Acessors and Methods for immunoMeta Objects |
| events.immunoClust | Acessors and Methods for immunoClust Objects |
| events.immunoMeta | Acessors and Methods for immunoMeta Objects |
| finalize | Acessors and Methods for immunoMeta Objects |
| finalize-method | Acessors and Methods for immunoMeta Objects |
| finalize.immunoMeta | Acessors and Methods for immunoMeta Objects |
| findLevel | Acessors and Methods for immunoMeta Objects |
| findLevel-method | Acessors and Methods for immunoMeta Objects |
| findLevel.immunoMeta | Acessors and Methods for immunoMeta Objects |
| immunoClust | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry |
| immunoClust-class | immunoClust-Object |
| immunoClust.object | immunoClust-Object |
| immunoClust.package | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry |
| immunoMeta | 'immunoMeta': a class for storing meta-clustering results |
| immunoMeta-class | 'immunoMeta': a class for storing meta-clustering results |
| immunoMeta-object | 'immunoMeta': a class for storing meta-clustering results |
| immunoMeta.class | 'immunoMeta': a class for storing meta-clustering results |
| immunoMeta.object | 'immunoMeta': a class for storing meta-clustering results |
| label | Generic function definitions in immunoClust |
| label-method | Acessors and Methods for immunoClust Objects |
| label-method | Acessors and Methods for immunoMeta Objects |
| label.immunoClust | Acessors and Methods for immunoClust Objects |
| label.immunoMeta | Acessors and Methods for immunoMeta Objects |
| level | Acessors and Methods for immunoMeta Objects |
| level-method | Acessors and Methods for immunoMeta Objects |
| level.immunoMeta | Acessors and Methods for immunoMeta Objects |
| level<- | Acessors and Methods for immunoMeta Objects |
| level<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| meta.Clustering | Clustering of Cell-clusters in the immunoClust-pipeline |
| meta.export | immunoClust Meta-clustering Results Export |
| meta.exprs | Collecting Data of an immunoClust vector |
| meta.freqTable | immunoClust Meta-clustering Results Export |
| meta.hclust | Hierarchical Meta-clustering of Cell-clusters in the immunoClust-pipeline |
| meta.majorEvents | immunoClust Meta-clustering Results Export |
| meta.ME | immunoClust EM(t)-iteration on Cell-clusters |
| meta.Normalize | immunoClust normalization step with the meta.clustering process |
| meta.numClusters | immunoClust Meta-clustering Results Export |
| meta.numEvents | immunoClust Meta-clustering Results Export |
| meta.parMFI | immunoClust Meta-clustering Results Export |
| meta.process | Meta-clustering of Cell-clusters in the immunoClust-pipeline |
| meta.RegNorm | immunoClust normalization procedure |
| meta.relEvents | immunoClust Meta-clustering Results Export |
| meta.relEvents2 | immunoClust Meta-clustering Results Export |
| meta.relEvents3 | immunoClust Meta-clustering Results Export |
| meta.relParent | immunoClust Meta-clustering Results Export |
| meta.SubClustering | immunoClust Model Refinement Step in iterative Meta-clustering |
| meta.TestSubCluster | immunoClust Model Refinement Step in iterative Meta-clustering |
| move<- | Acessors and Methods for immunoMeta Objects |
| move<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| mu | Generic function definitions in immunoClust |
| mu-method | Acessors and Methods for immunoClust Objects |
| mu-method | Acessors and Methods for immunoMeta Objects |
| mu.immunoClust | Acessors and Methods for immunoClust Objects |
| mu.immunoMeta | Acessors and Methods for immunoMeta Objects |
| ncls | Generic function definitions in immunoClust |
| ncls-method | Acessors and Methods for immunoClust Objects |
| ncls-method | Acessors and Methods for immunoMeta Objects |
| ncls.immunoClust | Acessors and Methods for immunoClust Objects |
| ncls.immunoMeta | Acessors and Methods for immunoMeta Objects |
| nobs | Generic function definitions in immunoClust |
| nobs-method | Acessors and Methods for immunoClust Objects |
| nobs-method | Acessors and Methods for immunoMeta Objects |
| nobs.immunoClust | Acessors and Methods for immunoClust Objects |
| nobs.immunoMeta | Acessors and Methods for immunoMeta Objects |
| npar | Generic function definitions in immunoClust |
| npar-method | Acessors and Methods for immunoClust Objects |
| npar-method | Acessors and Methods for immunoMeta Objects |
| npar.immunoClust | Acessors and Methods for immunoClust Objects |
| npar.immunoMeta | Acessors and Methods for immunoMeta Objects |
| nsam | Generic function definitions in immunoClust |
| nsam-method | Acessors and Methods for immunoMeta Objects |
| nsam.immunoMeta | Acessors and Methods for immunoMeta Objects |
| parameters | Generic function definitions in immunoClust |
| parameters-method | Acessors and Methods for immunoClust Objects |
| parameters-method | Acessors and Methods for immunoMeta Objects |
| parameters.immunoClust | Acessors and Methods for immunoClust Objects |
| parameters.immunoMeta | Acessors and Methods for immunoMeta Objects |
| parameters<- | Generic function definitions in immunoClust |
| parameters<--method | Acessors and Methods for immunoClust Objects |
| parameters<--method | Acessors and Methods for immunoMeta Objects |
| parameters<-.immunoClust | Acessors and Methods for immunoClust Objects |
| parameters<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| parent<- | Acessors and Methods for immunoMeta Objects |
| parent<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| parent<-.immunoMeta-method | Acessors and Methods for immunoMeta Objects |
| plot-method | Scatterplot of immunoClust Clustering Results |
| plot-method | Scatterplot of immunoMeta Structured Clustering Results |
| plot.immunoClust | Scatterplot of immunoClust Clustering Results |
| plot.immunoMeta | Scatterplot of immunoMeta Structured Clustering Results |
| prop | Acessors and Methods for immunoMeta Objects |
| prop-method | Acessors and Methods for immunoMeta Objects |
| prop.immunoMeta | Acessors and Methods for immunoMeta Objects |
| prop<- | Acessors and Methods for immunoMeta Objects |
| prop<--method | Acessors and Methods for immunoMeta Objects |
| prop<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| remove<- | Acessors and Methods for immunoMeta Objects |
| remove<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| removed.above | Brief Information of removed Cell-events by immunoClust Cell-event Clustering |
| removed.below | Brief Information of removed Cell-events by immunoClust Cell-event Clustering |
| sam_clsEvents | Generic function definitions in immunoClust |
| sam_clsEvents-method | Acessors and Methods for immunoMeta Objects |
| sam_clsEvents.immunoMeta | Acessors and Methods for immunoMeta Objects |
| sam_clsMu | Generic function definitions in immunoClust |
| sam_clsMu-method | Acessors and Methods for immunoMeta Objects |
| sam_clsMu.immunoMeta | Acessors and Methods for immunoMeta Objects |
| sam_clsSigma | Generic function definitions in immunoClust |
| sam_clsSigma-method | Acessors and Methods for immunoMeta Objects |
| sam_clsSigma.immunoMeta | Acessors and Methods for immunoMeta Objects |
| sam_clsWeights | Generic function definitions in immunoClust |
| sam_clsWeights-method | Acessors and Methods for immunoMeta Objects |
| sam_clsWeights.immunoMeta | Acessors and Methods for immunoMeta Objects |
| sam_ncls | Generic function definitions in immunoClust |
| sam_ncls-method | Acessors and Methods for immunoMeta Objects |
| sam_ncls.immunoMeta | Acessors and Methods for immunoMeta Objects |
| show | immunoClust-Object |
| show-method | immunoClust-Object |
| show-method | 'immunoMeta': a class for storing meta-clustering results |
| show.immunoClust | immunoClust-Object |
| show.immunoMeta | 'immunoMeta': a class for storing meta-clustering results |
| sigma | Generic function definitions in immunoClust |
| sigma-method | Acessors and Methods for immunoClust Objects |
| sigma-method | Acessors and Methods for immunoMeta Objects |
| sigma.immunoClust | Acessors and Methods for immunoClust Objects |
| sigma.immunoMeta | Acessors and Methods for immunoMeta Objects |
| splom | Scatterplot Matrix of immunoClust Clustering Results |
| splom-method | Scatterplot Matrix of immunoClust Clustering Results |
| splom.immunoClust | Scatterplot Matrix of immunoClust Clustering Results |
| subset | Generic function definitions in immunoClust |
| subset-method | Acessors and Methods for immunoClust Objects |
| subset-method | Acessors and Methods for immunoMeta Objects |
| subset.immunoClust | Acessors and Methods for immunoClust Objects |
| subset.immunoMeta | Acessors and Methods for immunoMeta Objects |
| summary | immunoClust-Object |
| summary-method | immunoClust-Object |
| summary-method | 'immunoMeta': a class for storing meta-clustering results |
| summary.immunoClust | immunoClust-Object |
| summary.immunoMeta | 'immunoMeta': a class for storing meta-clustering results |
| trans.ApplyToData | immunoClust asinh-Transformation |
| trans.FitToData | immunoClust asinh-Transformation Optimization |
| transfer<- | Acessors and Methods for immunoMeta Objects |
| transfer<--method | Acessors and Methods for immunoMeta Objects |
| transfer<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
| transformParams | Generic function definitions in immunoClust |
| transformParams-method | Acessors and Methods for immunoClust Objects |
| transformParams-method | Acessors and Methods for immunoMeta Objects |
| transformParams.immunoClust | Acessors and Methods for immunoClust Objects |
| transformParams.immunoMeta | Acessors and Methods for immunoMeta Objects |
| unclassified | Acessors and Methods for immunoMeta Objects |
| unclassified-method | Acessors and Methods for immunoMeta Objects |
| unclassified.immunoMeta | Acessors and Methods for immunoMeta Objects |
| weights | Generic function definitions in immunoClust |
| weights-method | Acessors and Methods for immunoClust Objects |
| weights-method | Acessors and Methods for immunoMeta Objects |
| weights.immunoClust | Acessors and Methods for immunoClust Objects |
| weights.immunoMeta | Acessors and Methods for immunoMeta Objects |