immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

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Documentation for package ‘immunoClust’ version 1.14.1

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immunoClust-package immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
cell.Classify immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.classifyAll Clustering of Cell-events in the immunoClust-pipeline
cell.ClustData Model Based Clustering of Data for a pre-defined Number of Clusters
cell.EM immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.Estimation immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.FitModel immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.hclust Hierarchical Model Based Clustering of Cell-events in the immunoClust-pipeline
cell.InitialModel Clustering of Cell-events in the immunoClust-pipeline
cell.MajorIterationLoop Clustering of Cell-events in the immunoClust-pipeline
cell.MajorIterationTrans Clustering of Cell-events in the immunoClust-pipeline
cell.ME immunoClust EM-iteration on Cell-events given initial Cluster Membership Assignment
cell.process Clustering of Cell-events in the immunoClust-pipeline
cell.SubClustering immunoClust Model Refinement Step in iterative Cell-events Clustering
cell.TestSubCluster immunoClust Model Refinement Step in iterative Cell-events Clustering
dat.exp immunoClust Meta-clustering Sample
dat.fcs immunoClust Cell-clustering Sample
dat.meta immunoClust Meta-clustering Results Sample
datSplom Scatterplot Matrix of immunoClust Clustering Results
immunoClust immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
immunoClust-class immunoClust-Object
immunoClust.object immunoClust-Object
immunoClust.package immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
meta.Clustering Clustering of Cell-clusters in the immunoClust-pipeline
meta.export immunoClust Meta-clustering Results Export
meta.exprs Collecting Data of an immunoClust vector
meta.freqTable immunoClust Meta-clustering Results Export
meta.hclust Hierarchical Meta-clustering of Cell-clusters in the immunoClust-pipeline
meta.majorEvents immunoClust Meta-clustering Results Export
meta.ME immunoClust EM(t)-iteration on Cell-clusters
meta.Normalize immunoClust normalization step with the meta.clustering process
meta.numClusters immunoClust Meta-clustering Results Export
meta.numEvents immunoClust Meta-clustering Results Export
meta.parMFI immunoClust Meta-clustering Results Export
meta.plotClusters Ploting of immunoClust Meta-clustering Results
meta.plotClustersForScatter Ploting of immunoClust Meta-clustering Results
meta.plotExpClusters Ploting of immunoClust Meta-clustering Results
meta.plotExpResult Ploting of immunoClust Meta-clustering Results
meta.plotGate Ploting of immunoClust Meta-clustering Results
meta.plotGating Ploting of immunoClust Meta-clustering Results
meta.plotScatter Ploting of immunoClust Meta-clustering Results
meta.process Meta-clustering of Cell-clusters in the immunoClust-pipeline
meta.RegNorm immunoClust normalization procedure
meta.relEvents immunoClust Meta-clustering Results Export
meta.relEvents2 immunoClust Meta-clustering Results Export
meta.relEvents3 immunoClust Meta-clustering Results Export
meta.SubClustering immunoClust Model Refinement Step in iterative Meta-clustering
meta.TestSubCluster immunoClust Model Refinement Step in iterative Meta-clustering
plot Scatterplot of immunoClust Clustering Results
plot-method Scatterplot of immunoClust Clustering Results
plot.immunoClust Scatterplot of immunoClust Clustering Results
removed.above Brief Information of removed Cell-events by immunoClust Cell-event Clustering
removed.below Brief Information of removed Cell-events by immunoClust Cell-event Clustering
show immunoClust-Object
show-method immunoClust-Object
show.immunoClust immunoClust-Object
splom Scatterplot Matrix of immunoClust Clustering Results
splom-method Scatterplot Matrix of immunoClust Clustering Results
splom.immunoClust Scatterplot Matrix of immunoClust Clustering Results
summary immunoClust-Object
summary-method immunoClust-Object
summary.immunoClust immunoClust-Object
trans.ApplyToData immunoClust asinh-Transformation
trans.FitToData immunoClust asinh-Transformation Optimization