| as.hdist | Class "hdist" - S4 class to hold distance matrices. |
| as.hdist-method | Class "hdist" - S4 class to hold distance matrices. |
| as.matrix-method | Class "hdist" - S4 class to hold distance matrices. |
| as.vector-method | Class "hdist" - S4 class to hold distance matrices. |
| boot2fuzzy | function to write MapleTree files for viewing bootstrap estimated cluster membership probabilities based on hopach clustering results |
| boothopach | functions to perform non-parametric bootstrap resampling of hopach clustering results |
| bootmedoids | functions to perform non-parametric bootstrap resampling of hopach clustering results |
| bootplot | function to make a barplot of bootstrap estimated cluster membership probabilities |
| coerce-method | Class "hdist" - S4 class to hold distance matrices. |
| correlationordering | function to compute empirical correlation between distance in a list and distance by a metric |
| dim-method | Class "hdist" - S4 class to hold distance matrices. |
| dissmatrix | functions to compute pair wise distances between vectors |
| dissvector | functions to compute pair wise distances between vectors |
| distancematrix | functions to compute pair wise distances between vectors |
| distancevector | functions to compute pair wise distances between vectors |
| dplot | function to make a pseudo-color image of a distance matrix with the row and column ordering based on HOPACH clustering results. |
| generic-method | Class "hdist" - S4 class to hold distance matrices. |
| golub | Gene expression dataset from Golub et al. (1999) |
| golub.cl | Gene expression dataset from Golub et al. (1999) |
| golub.gnames | Gene expression dataset from Golub et al. (1999) |
| hdist | Class "hdist" - S4 class to hold distance matrices. |
| hdist-class | Class "hdist" - S4 class to hold distance matrices. |
| hopach | function to perform HOPACH hierarchical clustering |
| hopach2tree | function to write MapleTree files for viewing hopach hierarchical clustering results |
| improveordering | function to compute empirical correlation between distance in a list and distance by a metric |
| is.hdist | Class "hdist" - S4 class to hold distance matrices. |
| labels-method | Class "hdist" - S4 class to hold distance matrices. |
| labelstomss | Functions to compute silhouettes and split silhouettes |
| length-method | Class "hdist" - S4 class to hold distance matrices. |
| makeoutput | function to write a text file with hopach output |
| makeTree | function to write MapleTree files for viewing hopach hierarchical clustering results |
| msscheck | Functions to compute silhouettes and split silhouettes |
| prune | function to prune a HOPACH tree. |
| show-method | Class "hdist" - S4 class to hold distance matrices. |
| silcheck | Functions to compute silhouettes and split silhouettes |
| vectmatrix | functions to compute pair wise distances between vectors |
| [-method | Class "hdist" - S4 class to hold distance matrices. |