GWAS for Selfing Species
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Documentation for package ‘GWAS.BAYES’ version 1.4.0
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| aggregate_SNPs | aggregate_SNPs |
| cor_plot | cor_plot(SNPs,significant,info = FALSE) |
| eigenMapMatMult2 | eigenMapMatMult2 |
| eigenMapMatMult3 | eigenMapMatMult3 |
| ga_modelselection_nopc | ga_modelselection_nopc |
| ga_modelselection_nopc_new | ga_modelselection_nopc_new |
| ga_modelselection_pcs | ga_modelselection_pcs |
| ga_modelselection_pcs_new | ga_modelselection_pcs_new |
| level_function | level_function |
| log_profile_likelihood_REML | log_profile_likelihood_REML |
| optim_llik_RE_BIC | optim_llik_RE_BIC |
| optim_llik_RE_p | optim_llik_RE_p |
| optim_llik_SLR_BIC | optim_llik_SLR_BIC |
| optim_llik_SLR_p | optim_llik_SLR_p |
| pca_function | pca_function |
| postGWAS | postGWAS |
| postGWAS_Haplotype | postGWAS_Haplotype |
| preprocess_SNPs | preprocess_SNPs |
| preselection | preselection |
| preselection_nopc | preselection_nopc |
| preselection_pc | preselection_pc |
| Pval_function | Pval_function |
| RealDataInfo | RealDataInfo |
| RealDataKinship | RealDataKinship |
| RealDataSNPs_Y | RealDataSNPs_Y |
| resids_diag | resids_diag |
| SNP_data_function_nopcp | SNP_data_function_nopcp |
| SNP_data_function_pcp | SNP_data_function_pcp |
| standardize | standardize |
| vignette_kinship_dat | vignette_kinship_dat |
| vignette_lm_dat | vignette_lm_dat |