GUIDE-seq analysis pipeline

Documentation for package ‘GUIDEseq’ version 1.8.0

GUIDEseq-package	Analysis of GUIDE-seq
annotateOffTargets	Annotate offtargets with gene name
combineOfftargets	Combine Offtargets
createBarcodeFasta	Create barcode as fasta file format for building bowtie1 index
getPeaks	Obtain peaks from GUIDE-seq
getUniqueCleavageEvents	Using UMI sequence to obtain the starting sequence library
getUsedBarcodes	Create barcodes from the p5 and p7 index used for each sequencing lane
GUIDEseq	Analysis of GUIDE-seq
GUIDEseqAnalysis	Analysis pipeline for GUIDE-seq dataset
mergePlusMinusPeaks	Merge peaks from plus strand and minus strand
offTargetAnalysisOfPeakRegions	Offtarget Analysis of GUIDE-seq peaks
peaks.gr	example cleavage sites
uniqueCleavageEvents	example unique cleavage sites