| CooksDPerGene | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures |
| dfbetasPerGene | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures |
| dffitsPerGene | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures |
| getResidPerGene | Row-by-Row Linear-Model Residuals for Gene Expression (or similar) Data Structures |
| gsealmPerm | Nonparametric inference for linear models in Gene-Set-Enrichment Analysis (GSEA) |
| GSNormalize | Aggregating and calculating expression statistics by Gene Set |
| identity | Aggregating and calculating expression statistics by Gene Set |
| Leverage | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures |
| lmPerGene | Fit linear model for each gene |
| mnDiffPlot | Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA) |
| one | Aggregating and calculating expression statistics by Gene Set |
| resplot | Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA) |
| restrip | Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA) |