| GPA-package | GPA (Genetic analysis incorporating Pleiotropy and Annotation) |
| assoc | Association mapping |
| assoc-method | Association mapping |
| aTest | Hypothesis testing for annotation enrichment |
| cov | Class "GPA" |
| cov-method | Class "GPA" |
| estimates | Class "GPA" |
| estimates-method | Class "GPA" |
| fdr | Class "GPA" |
| fdr-method | Class "GPA" |
| fitAll | Fit GPA model for all possible pairs of GWAS datasets |
| GPA | Fit GPA model |
| GPA-class | Class "GPA" |
| print-method | Class "GPA" |
| pTest | Hypothesis testing for pleiotropy |
| se | Class "GPA" |
| se-method | Class "GPA" |
| shinyGPA | Run ShinyGPA app |
| show-method | Class "GPA" |