| filtered | A GenomicRangesList object used as an example in the GOTHiC package |
| GOTHiC | Genome Organisation Through HiC |
| GOTHiChicup | Genome Organisation Through HiC from HiCUP output |
| lymphoid_chr20_paired_filtered | A GenomicRangesList object used as an example in the GOTHiC package |
| mapReadsToRestrictionSites | Function to map aligned and paired reads to the restriction fragments |
| pairReads | Function pairs aligned paired NGS reads |