| allsnps | create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints |
| casting | Class '"rsid"' |
| clipPCs | transformations of expression data in smlSet instances |
| clipPCs-method | transformations of expression data in smlSet instances |
| combine-method | Class '"smlSet"' |
| dropMonomorphies | Filter genotype contents of an smlSet according to certain SNP allele frequency features. |
| exprs-method | Class '"smlSet"' |
| externalize | create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints |
| genesym | Class '"rsid"' |
| genesym-class | Class '"rsid"' |
| genesym-method | Class '"rsid"' |
| getSS | construct an smlSet instance from existing resources |
| GTFfilter | Filter genotype contents of an smlSet according to certain SNP allele frequency features. |
| MAFfilter | Filter genotype contents of an smlSet according to certain SNP allele frequency features. |
| make_smlSet | construct an smlSet instance from existing resources |
| nsFilter-method | Class '"smlSet"' |
| permEx | Class '"smlSet"' |
| permEx-method | Class '"smlSet"' |
| plot_EvG | display the association between expression values and genotypes in an smlSet instance |
| plot_EvG-method | display the association between expression values and genotypes in an smlSet instance |
| probeId | Class '"rsid"' |
| probeId-class | Class '"rsid"' |
| probeId-method | Class '"rsid"' |
| regressOut | transformations of expression data in smlSet instances |
| rsid | Class '"rsid"' |
| rsid-class | Class '"rsid"' |
| rsid-method | Class '"rsid"' |
| smList | Class '"smlSet"' |
| smList-method | Class '"smlSet"' |
| smlSet-class | Class '"smlSet"' |
| [-method | Class '"smlSet"' |