| GenomicAlignments::GenomicAlignmentsIntroduction | An Introduction to the GenomicAlignments Package | source | R code | ||
| GenomicAlignments::OverlapEncodings | Overlap encodings | source | R code | ||
| GenomicAlignments::WorkingWithAlignedNucleotides | Working with aligned nucleotides | source | R code | ||
| GenomicAlignments::summarizeOverlaps | Counting reads with summarizeOverlaps | source | R code |