| as.character.Pedigree | Pedigree |
| as.factor.Pedigree | Pedigree |
| as.integer.Pedigree | Pedigree |
| as.Pedigree | Pedigree |
| as.Pedigree.data.frame | Pedigree |
| as.Pedigree.matrix | Pedigree |
| as.Pedigree.Pedigree | Pedigree |
| check | Check consistency of data in pedigree |
| check.Pedigree | Check consistency of data in pedigree |
| checkId | Check consistency of data in pedigree |
| extend | Extend pedigree |
| Falconer | Pedigree and data examples |
| Falconer5.1 | Pedigree and data examples |
| family | Find families (lines) in the pedigree |
| family<- | Find families (lines) in the pedigree |
| gameteFlowM | Gene and gamete flow matrices |
| geneContribution | Gene contribution or proportion of genes in pedigree by individual |
| geneFlowT | Gene and gamete flow matrices |
| geneFlowTinv | Gene and gamete flow matrices |
| generatePedigree | Generate Pedigree example |
| generation | Calculate generation value |
| generation<- | Calculate generation value |
| gpi | Genotype probability index |
| gpLong2Wide | Utility functions for gpi() |
| hwp | Utility functions for gpi() |
| inbreeding | Inbreeding coefficient |
| inverseAdditive | Additive relationship matrix and its inverse |
| is.Pedigree | Pedigree |
| isFounder | Founder and non-founder individuals in the pedigree |
| kinship | Additive relationship matrix and its inverse |
| mendelianSamplingD | Gene and gamete flow matrices |
| model.matrix.Pedigree | Model matrix for individuals with and without records |
| Mrode | Pedigree and data examples |
| Mrode2.1 | Pedigree and data examples |
| Mrode3.1 | Pedigree and data examples |
| nIndividual | Number of individuals in a pedigree |
| Pedigree | Pedigree |
| prune | Prune pedigree |
| relationshipAdditive | Additive relationship matrix and its inverse |
| removeIndividual | Remove individual from pedigree |
| sort.Pedigree | Sort pedigree |
| summary.Pedigree | Pedigree summary |
| undocumented | Undocumented functions |