| affinity.spline.coefs | Spline coefficients for estimation of affinity from probe sequence |
| average.for.PAV | Estimation of non-specific Binding Background Parameters |
| base.profiles | Probe Affinity computation |
| base.profiles.mm | Probe Affinity computation |
| base.profiles.nc | Probe Affinity computation |
| bg.adjust.affinities | Background adjustment with sequence information (internal function) |
| bg.adjust.constant | Background adjustment with sequence information (internal function) |
| bg.adjust.fullmodel | Background adjustment with sequence information (internal function) |
| bg.adjust.gcrma | GCRMA background adjust (internal function) |
| bg.adjust.mm | Background adjustment with sequence information (internal function) |
| bg.adjust.optical | Background adjustment with sequence information (internal function) |
| bg.parameters.ns | Estimation of non-specific Binding Background Parameters |
| check.probes | Probe Affinity computation |
| compute.affinities | Probe Affinity computation |
| compute.affinities.local | Probe Affinity computation |
| compute.affinities2 | Probe Affinity computation |
| compute.affinity.coef | Probe Affinity computation |
| gcrma | Robust Multi-Array expression measure using sequence information |
| gcrma.bg.transformation | Robust Multi-Array expression measure using sequence information |
| gcrma.bg.transformation.fast | Robust Multi-Array expression measure using sequence information |
| gcrma.engine | GCRMA background adjust engine(internal function) |
| gcrma.engine2 | GCRMA background adjust engine(internal function) |
| GSB.adj | Robust Multi-Array expression measure using sequence information |
| just.gcrma | Compute GCRMA Directly from CEL Files |
| justGCRMA | Compute GCRMA Directly from CEL Files |
| left.sigma | Estimation of non-specific Binding Background Parameters |
| PAV | Estimation of non-specific Binding Background Parameters |
| plotBaseProfiles | Probe Affinity computation |