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| flowQ-package | Quality control for flow cytometry |
| aggregatorList | Class "aggregatorList" |
| aggregatorList-class | Class "aggregatorList" |
| binaryAggregator | Class "binaryAggregator" |
| binaryAggregator-class | Class "binaryAggregator" |
| discreteAggregator | Class "discreteAggregator" |
| discreteAggregator-class | Class "discreteAggregator" |
| evaluateProcess | Evaluate QA processes |
| factorAggregator | Class "factorAggregator" |
| factorAggregator-class | Class "factorAggregator" |
| flowQ | Quality control for flow cytometry |
| initialize-method | Class "aggregatorList" |
| initialize-method | Class "qaGraph" |
| initialize-method | Class "qaGraphList" |
| initialize-method | Abstraction of the results of a QA process |
| initialize-method | Class "qaProcessFrame" |
| locateDuplicatedParameters | Locate Duplicated Parameters |
| names-method | Class "qaGraph" |
| normalizeSets | Locate Duplicated Parameters |
| numericAggregator | Class "numericAggregator" |
| numericAggregator-class | Class "numericAggregator" |
| outlier-class | Virtual Class "outlier" |
| outlierResult-class | Class "outlierResult" |
| outliers | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
| outliers-method | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
| outliers-methods | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
| preProcessFlowList | Preprocess a list of flowSets to add empty flowFrames for patients in which certain aliquots are missing |
| qaAggregator | Abstraction of the possible outcomes of a QA process |
| qaAggregator-class | Abstraction of the possible outcomes of a QA process |
| qaGraph | Class "qaGraph" |
| qaGraph-class | Class "qaGraph" |
| qaGraphList | Class "qaGraphList" |
| qaGraphList-class | Class "qaGraphList" |
| qaProcess | Abstraction of the results of a QA process |
| qaProcess-class | Abstraction of the results of a QA process |
| qaProcess.2DStatsPlot | Creates a QA process for 2D summary statistic comparisons across multiple samples |
| qaProcess.BoundaryPlot | Creates a QA process for comparison of the percentage of boundary events for the specified parameters across multiple samples |
| qaProcess.cellnumber | Create QA process of type 'cellnumber' |
| qaProcess.DensityPlot | Creates a QA process for comparisons of density plots across multiple samples |
| qaProcess.ECDFPlot | Creates a QA process for comparisons of ECDF's across multiple samples |
| qaProcess.KLDistPlot | Creates a QA process for comparisons of KL Distances across multiple samples |
| qaProcess.marginevents | Create QA process of type 'marginevents' |
| qaProcess.timeflow | Create QA process of type 'timeflow' |
| qaProcess.timeline | Create QA process of type 'timeline' |
| qaProcessFrame | Class "qaProcessFrame" |
| qaProcessFrame-class | Class "qaProcessFrame" |
| qaProcessSummary | Class "qaProcessSummary" |
| qaProcessSummary-class | Class "qaProcessSummary" |
| qaReport | Create HTML report using one or several QA process function(s) |
| qData | Data for demonstrating QA processes that compares dye parameters from each patient across multiple aliquots |
| rangeAggregator | Class "rangeAggregator" |
| rangeAggregator-class | Class "rangeAggregator" |
| show-method | Class "aggregatorList" |
| show-method | Class "binaryAggregator" |
| show-method | Class "discreteAggregator" |
| show-method | Class "factorAggregator" |
| show-method | Class "numericAggregator" |
| show-method | Class "qaGraph" |
| show-method | Class "qaGraphList" |
| show-method | Abstraction of the results of a QA process |
| show-method | Class "qaProcessFrame" |
| show-method | Class "qaProcessSummary" |
| show-method | Class "rangeAggregator" |
| show-method | Class "stringAggregator" |
| stringAggregator | Class "stringAggregator" |
| stringAggregator-class | Class "stringAggregator" |
| txtFormatQAObject | Formats results contained in QA process objects into a data frame with appropriate row and column names |
| validProcess | Validate a QAProcess object |
| writeLines-method | Class "binaryAggregator" |
| writeLines-method | Class "discreteAggregator" |
| writeLines-method | Class "factorAggregator" |
| writeLines-method | Class "numericAggregator" |
| writeLines-method | Class "qaProcessSummary" |
| writeLines-method | Class "rangeAggregator" |
| writeLines-method | Class "stringAggregator" |
| writeLines-method | Create HTML report for (lists of) qaProcess objects |
| writeQAReport | Create HTML report for (lists of) qaProcess objects |
| writeQATextReport | Create tab delimited text files for (lists of) qaProcess objects |