| flowMatch-package | Matching cell populations and building meta-clusters and templates from a collection of FC samples. |
| Cluster | Cluster: A class representing a cell population in FC |
| Cluster-class | Cluster: A class representing a cell population in FC |
| ClusteredSample | ClusteredSample: A class representing a clustered FC Sample |
| ClusteredSample-class | ClusteredSample: A class representing a clustered FC Sample |
| ClusterMatch | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| ClusterMatch-class | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| create.template | Creating a template of a collection of FC samples |
| dist.cluster | Dissimilarity between a pair of clusters |
| dist.matrix | Dissimilarity matrix between each pair of clusters/meta-clusters across a pair of samples/templates |
| dist.sample | Dissimilarity between a pair of clustered FC samples |
| dist.template | Dissimilarity between a pair of FC templates |
| flowMatch | Matching cell populations and building meta-clusters and templates from a collection of FC samples. |
| get.center | Cluster: A class representing a cell population in FC |
| get.center-method | Cluster: A class representing a cell population in FC |
| get.center-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.cluster.id | Cluster: A class representing a cell population in FC |
| get.cluster.id-method | Cluster: A class representing a cell population in FC |
| get.clusters | ClusteredSample: A class representing a clustered FC Sample |
| get.clusters-method | ClusteredSample: A class representing a clustered FC Sample |
| get.clusters-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.cov | Cluster: A class representing a cell population in FC |
| get.cov-method | Cluster: A class representing a cell population in FC |
| get.cov-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.dimension | ClusteredSample: A class representing a clustered FC Sample |
| get.dimension-method | ClusteredSample: A class representing a clustered FC Sample |
| get.dimension-method | Template: An S4 class representing a template of a group of FC Samples. |
| get.labels | ClusteredSample: A class representing a clustered FC Sample |
| get.labels-method | ClusteredSample: A class representing a clustered FC Sample |
| get.match12 | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.match12-method | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.match21 | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.match21-method | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.matching.cost | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.matching.cost-method | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.metaClusters | Template: An S4 class representing a template of a group of FC Samples. |
| get.metaClusters-method | Template: An S4 class representing a template of a group of FC Samples. |
| get.num.clusters | ClusteredSample: A class representing a clustered FC Sample |
| get.num.clusters-method | ClusteredSample: A class representing a clustered FC Sample |
| get.num.clusters-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.num.metaclusters | Template: An S4 class representing a template of a group of FC Samples. |
| get.num.metaclusters-method | Template: An S4 class representing a template of a group of FC Samples. |
| get.sample.id | Cluster: A class representing a cell population in FC |
| get.sample.id-method | Cluster: A class representing a cell population in FC |
| get.sample.id-method | ClusteredSample: A class representing a clustered FC Sample |
| get.size | Cluster: A class representing a cell population in FC |
| get.size-method | Cluster: A class representing a cell population in FC |
| get.size-method | ClusteredSample: A class representing a clustered FC Sample |
| get.size-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.size-method | Template: An S4 class representing a template of a group of FC Samples. |
| get.template.id | Template: An S4 class representing a template of a group of FC Samples. |
| get.template.id-method | Template: An S4 class representing a template of a group of FC Samples. |
| get.tree | Template: An S4 class representing a template of a group of FC Samples. |
| get.tree-method | Template: An S4 class representing a template of a group of FC Samples. |
| get.unmatch.penalty | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.unmatch.penalty-method | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| mahalanobis.dist | Mahanalobis Distance |
| match.clusters | Matching of clusters/meta-clusters across FC samples/templates |
| match.clusters.dist | Matching of clusters/meta-clusters across FC samples/templates |
| MetaCluster | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| MetaCluster-class | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| plot-method | ClusteredSample: A class representing a clustered FC Sample |
| plot-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| plot-method | Template: An S4 class representing a template of a group of FC Samples. |
| sample.id<- | Cluster: A class representing a cell population in FC |
| sample.id<--method | Cluster: A class representing a cell population in FC |
| show-method | Cluster: A class representing a cell population in FC |
| show-method | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| show-method | ClusteredSample: A class representing a clustered FC Sample |
| show-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| show-method | Template: An S4 class representing a template of a group of FC Samples. |
| summary-method | Cluster: A class representing a cell population in FC |
| summary-method | ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| summary-method | ClusteredSample: A class representing a clustered FC Sample |
| summary-method | MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| summary-method | Template: An S4 class representing a template of a group of FC Samples. |
| symmetric.KL | Symmetrized Kullback-Leibler divergence |
| Template | Template: An S4 class representing a template of a group of FC Samples. |
| Template-class | Template: An S4 class representing a template of a group of FC Samples. |
| template.tree | Plot the hierarchy of samples established while creating a template-tree |
| template.tree-method | Plot the hierarchy of samples established while creating a template-tree |