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| calcGseaStat | Calculates GSEA statistics for a given query gene set |
| examplePathways | Example list of mouse Reactome pathways. |
| exampleRanks | Example vector of gene-level statistics obtained for Th1 polarization. |
| fgsea | Runs preranked gene set enrichment analysis. |
| gmtPathways | Returns a list of pathways from a GMT file. |
| plotEnrichment | Plots GSEA enrichment plot. |
| plotGseaTable | Plots table of enrichment graphs using ggplot and gridExtra. |
| reactomePathways | Returns a list of Reactome pathways for given Entrez gene IDs |