FABIA: Factor Analysis for Bicluster Acquisition

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Documentation for package ‘fabia’ version 2.40.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

A C E F I L M N P R S U X Z

-- A --

avini	Factorization instances
avini-method	Factorization instances
avini<-	Factorization instances
avini<--method	Factorization instances

-- C --

center	Factorization instances
center-method	Factorization instances
center<-	Factorization instances
center<--method	Factorization instances

-- E --

estimateMode	Estimation of the modes of the rows of a matrix
extractBic	Extraction of Biclusters
extractPlot	Plotting of Biclustering Results

-- F --

fabi	Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia	Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo	Demos for fabia
fabiap	Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias	Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp	Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion	Display version info for package and for FABIA
Factorization	Factorization instances
Factorization-class	Factorization instances
Factorization-method	Factorization instances

-- I --

ini	Factorization instances
ini-method	Factorization instances
ini<-	Factorization instances
ini<--method	Factorization instances

-- L --

L	Factorization instances
l	Factorization instances
L-method	Factorization instances
l-method	Factorization instances
L<-	Factorization instances
l<-	Factorization instances
L<--method	Factorization instances
l<--method	Factorization instances
lapla	Factorization instances
lapla-method	Factorization instances
lapla<-	Factorization instances
lapla<--method	Factorization instances
LZ	Factorization instances
LZ-method	Factorization instances
LZ<-	Factorization instances
LZ<--method	Factorization instances

-- M --

M	Factorization instances
M-method	Factorization instances
M<-	Factorization instances
M<--method	Factorization instances
makeFabiaData	Generation of Bicluster Data
makeFabiaDataBlocks	Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataBlocksPos	Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataPos	Generation of Bicluster Data
matrixImagePlot	Plotting of a Matrix
mfsc	Sparse Matrix Factorization for Bicluster Analysis (MFSC)

-- N --

n	Factorization instances
n-method	Factorization instances
n<-	Factorization instances
n<--method	Factorization instances
nmfdiv	Non-negative Matrix Factorization: Kullback-Leibler Divergence
nmfeu	Non-negative Matrix Factorization: Euclidean Distance
nmfsc	Non-negative Sparse Matrix Factorization

-- P --

p1	Factorization instances
p1-method	Factorization instances
p1<-	Factorization instances
p1<--method	Factorization instances
p2	Factorization instances
p2-method	Factorization instances
p2<-	Factorization instances
p2<--method	Factorization instances
parameters	Factorization instances
parameters-method	Factorization instances
parameters<-	Factorization instances
parameters<--method	Factorization instances
plot-method	Factorization instances
plotBicluster	Plotting of a bicluster
projFunc	Projection of a Vector to a Sparse Vector
projFuncPos	Projection of a Vector to a Non-negative Sparse Vector
Psi	Factorization instances
Psi-method	Factorization instances
Psi<-	Factorization instances
Psi<--method	Factorization instances

-- R --

readSamplesSpfabia	Factor Analysis for Bicluster Acquisition: Read Sparse Matrix Samples
readSpfabiaResult	Factor Analysis for Bicluster Acquisition: Read Results of SpFabia

-- S --

samplesPerFeature	Factor Analysis for Bicluster Acquisition: Supplies samples per feature
scaleData	Factorization instances
scaleData-method	Factorization instances
scaleData<-	Factorization instances
scaleData<--method	Factorization instances
show-method	Factorization instances
showSelected	Factorization instances
showSelected-method	Factorization instances
spfabia	Factor Analysis for Bicluster Acquisition: SPARSE FABIA
summary-method	Factorization instances

-- U --

U	Factorization instances
U-method	Factorization instances
U<-	Factorization instances
U<--method	Factorization instances

-- X --

X	Factorization instances
X-method	Factorization instances
X<-	Factorization instances
X<--method	Factorization instances
xavini	Factorization instances
xavini-method	Factorization instances
xavini<-	Factorization instances
xavini<--method	Factorization instances

-- Z --

Z	Factorization instances
Z-method	Factorization instances
Z<-	Factorization instances
Z<--method	Factorization instances