B C D E F G K L M O P R S T U V W
| BasicFilter-class | Filter results fetched from the Ensembl database |
| buildQuery | Basic usage of an Ensembl based annotation database |
| buildQuery-method | Basic usage of an Ensembl based annotation database |
| cdsBy | Retrieve annotation data from an Ensembl based package |
| cdsBy-method | Retrieve annotation data from an Ensembl based package |
| column | Filter results fetched from the Ensembl database |
| column-method | Filter results fetched from the Ensembl database |
| columns-method | Integration into the AnnotationDbi framework |
| condition | Filter results fetched from the Ensembl database |
| condition-method | Filter results fetched from the Ensembl database |
| condition<- | Filter results fetched from the Ensembl database |
| condition<--method | Filter results fetched from the Ensembl database |
| dbconn | Basic usage of an Ensembl based annotation database |
| dbconn-method | Basic usage of an Ensembl based annotation database |
| disjointExons-method | Retrieve annotation data from an Ensembl based package |
| end-method | Filter results fetched from the Ensembl database |
| EnsDb | Connect to an EnsDb object |
| EnsDb-class | Basic usage of an Ensembl based annotation database |
| ensDbFromAH | Generating a Ensembl annotation package from Ensembl |
| ensDbFromGff | Generating a Ensembl annotation package from Ensembl |
| ensDbFromGRanges | Generating a Ensembl annotation package from Ensembl |
| ensDbFromGtf | Generating a Ensembl annotation package from Ensembl |
| ensemblVersion | Basic usage of an Ensembl based annotation database |
| ensemblVersion-method | Basic usage of an Ensembl based annotation database |
| EntrezidFilter | Constructor functions for filter objects |
| EntrezidFilter-class | Filter results fetched from the Ensembl database |
| ExonidFilter | Constructor functions for filter objects |
| ExonidFilter-class | Filter results fetched from the Ensembl database |
| ExonrankFilter | Constructor functions for filter objects |
| ExonrankFilter-class | Filter results fetched from the Ensembl database |
| exons | Retrieve annotation data from an Ensembl based package |
| exons-method | Retrieve annotation data from an Ensembl based package |
| exonsBy | Retrieve annotation data from an Ensembl based package |
| exonsBy-method | Retrieve annotation data from an Ensembl based package |
| exonsByOverlaps-method | Retrieve annotation data from an Ensembl based package |
| fetchTablesFromEnsembl | Generating a Ensembl annotation package from Ensembl |
| fiveUTRsByTranscript-method | Retrieve annotation data from an Ensembl based package |
| GenebiotypeFilter | Constructor functions for filter objects |
| GenebiotypeFilter-class | Filter results fetched from the Ensembl database |
| GeneidFilter | Constructor functions for filter objects |
| GeneidFilter-class | Filter results fetched from the Ensembl database |
| GenenameFilter | Constructor functions for filter objects |
| GenenameFilter-class | Filter results fetched from the Ensembl database |
| genes | Retrieve annotation data from an Ensembl based package |
| genes-method | Retrieve annotation data from an Ensembl based package |
| getGeneRegionTrackForGviz | Utility functions |
| getGeneRegionTrackForGviz-method | Utility functions |
| getGenomeFaFile | Functionality related to DNA/RNA sequences |
| getGenomeFaFile-method | Functionality related to DNA/RNA sequences |
| GRangesFilter | Constructor functions for filter objects |
| GRangesFilter-class | Filter results fetched from the Ensembl database |
| keys-method | Integration into the AnnotationDbi framework |
| keytypes-method | Integration into the AnnotationDbi framework |
| lengthOf | Calculating lengths of features |
| lengthOf-method | Calculating lengths of features |
| listColumns | Basic usage of an Ensembl based annotation database |
| listColumns-method | Basic usage of an Ensembl based annotation database |
| listEnsDbs | List EnsDb databases in a MySQL server |
| listGenebiotypes | Basic usage of an Ensembl based annotation database |
| listGenebiotypes-method | Basic usage of an Ensembl based annotation database |
| listTables | Basic usage of an Ensembl based annotation database |
| listTables-method | Basic usage of an Ensembl based annotation database |
| listTxbiotypes | Basic usage of an Ensembl based annotation database |
| listTxbiotypes-method | Basic usage of an Ensembl based annotation database |
| makeEnsembldbPackage | Generating a Ensembl annotation package from Ensembl |
| makeEnsemblSQLiteFromTables | Generating a Ensembl annotation package from Ensembl |
| mapIds-method | Integration into the AnnotationDbi framework |
| metadata | Basic usage of an Ensembl based annotation database |
| metadata-method | Basic usage of an Ensembl based annotation database |
| organism | Basic usage of an Ensembl based annotation database |
| organism-method | Basic usage of an Ensembl based annotation database |
| print-method | Filter results fetched from the Ensembl database |
| promoters | Retrieve annotation data from an Ensembl based package |
| promoters-method | Retrieve annotation data from an Ensembl based package |
| returnFilterColumns | Basic usage of an Ensembl based annotation database |
| returnFilterColumns-method | Basic usage of an Ensembl based annotation database |
| returnFilterColumns<- | Basic usage of an Ensembl based annotation database |
| returnFilterColumns<--method | Basic usage of an Ensembl based annotation database |
| runEnsDbApp | Search annotations interactively |
| select | Integration into the AnnotationDbi framework |
| select-method | Integration into the AnnotationDbi framework |
| SeqendFilter | Constructor functions for filter objects |
| SeqendFilter-class | Filter results fetched from the Ensembl database |
| seqinfo | Basic usage of an Ensembl based annotation database |
| seqinfo-method | Basic usage of an Ensembl based annotation database |
| seqlevels | Basic usage of an Ensembl based annotation database |
| seqlevels-method | Basic usage of an Ensembl based annotation database |
| seqlevels-method | Filter results fetched from the Ensembl database |
| seqlevelsStyle | Support for other than Ensembl seqlevel style |
| seqlevelsStyle-method | Support for other than Ensembl seqlevel style |
| seqlevelsStyle<- | Support for other than Ensembl seqlevel style |
| seqlevelsStyle<--method | Support for other than Ensembl seqlevel style |
| SeqnameFilter | Constructor functions for filter objects |
| SeqnameFilter-class | Filter results fetched from the Ensembl database |
| seqnames-method | Filter results fetched from the Ensembl database |
| SeqstartFilter | Constructor functions for filter objects |
| SeqstartFilter-class | Filter results fetched from the Ensembl database |
| SeqstrandFilter | Constructor functions for filter objects |
| SeqstrandFilter-class | Filter results fetched from the Ensembl database |
| show | Basic usage of an Ensembl based annotation database |
| show-method | Basic usage of an Ensembl based annotation database |
| show-method | Filter results fetched from the Ensembl database |
| start-method | Filter results fetched from the Ensembl database |
| strand-method | Filter results fetched from the Ensembl database |
| supportedSeqlevelsStyles | Support for other than Ensembl seqlevel style |
| supportedSeqlevelsStyles-method | Support for other than Ensembl seqlevel style |
| SymbolFilter | Constructor functions for filter objects |
| SymbolFilter-class | Filter results fetched from the Ensembl database |
| threeUTRsByTranscript-method | Retrieve annotation data from an Ensembl based package |
| toSAF | Retrieve annotation data from an Ensembl based package |
| toSAF-method | Retrieve annotation data from an Ensembl based package |
| transcripts | Retrieve annotation data from an Ensembl based package |
| transcripts-method | Retrieve annotation data from an Ensembl based package |
| transcriptsBy | Retrieve annotation data from an Ensembl based package |
| transcriptsBy-method | Retrieve annotation data from an Ensembl based package |
| transcriptsByOverlaps-method | Retrieve annotation data from an Ensembl based package |
| TxbiotypeFilter | Constructor functions for filter objects |
| TxbiotypeFilter-class | Filter results fetched from the Ensembl database |
| TxidFilter | Constructor functions for filter objects |
| TxidFilter-class | Filter results fetched from the Ensembl database |
| updateEnsDb | Basic usage of an Ensembl based annotation database |
| updateEnsDb-method | Basic usage of an Ensembl based annotation database |
| useMySQL | Use a MySQL backend |
| useMySQL-method | Use a MySQL backend |
| value | Filter results fetched from the Ensembl database |
| value-method | Filter results fetched from the Ensembl database |
| value<- | Filter results fetched from the Ensembl database |
| value<--method | Filter results fetched from the Ensembl database |
| where | Filter results fetched from the Ensembl database |
| where-method | Filter results fetched from the Ensembl database |