| anno_enriched | Annotation Function to Show the Enrichment |
| as.normalizedMatrix | Convert a Normal Matrix to a normalizedMatrix Object |
| copyAttr | Copy Attributes to Another Object |
| default_smooth_fun | Default Smoothing function |
| discretize | Discretize a Continuous Matrix to a Discrete Matrix |
| dist_by_closeness | Distance by Closeness |
| EnrichedHeatmap | Constructor Method for the Enriched Heatmap |
| enriched_score | Enriched Scores |
| Extract.normalizedMatrix | Subset normalized matrix by rows |
| extract_anno_enriched | Extarct Enrichment Annotation Graphics as a Separated Plot |
| failed_rows | Indices of Rows Failed from Smoothing |
| getSignalsFromList | Get Signals from a List |
| makeWindows | Split Regions into Windows |
| normalizeToMatrix | Normalize Associations between Genomic Signals and Target Regions into a Matrix |
| print.normalizedMatrix | Print the Normalized Matrix |
| rbind.normalizedMatrix | Bind Matrix by Rows |
| [.normalizedMatrix | Subset normalized matrix by rows |