| +.AdditiveUnit | Add heatmaps or row annotations to a heatmap list |
| anno_enriched | Annotation function to show the enrichment |
| as.normalizedMatrix | Convert a normal matrix to a normalizedMatrix object |
| copyAttr | Copy attributes to another object |
| default_smooth_fun | Default smoothing function |
| discretize | Discretize a continuous matrix to a discrete matrix |
| dist_by_closeness | Distance by closeness |
| draw | Method dispatch page for draw |
| draw-method | Draw a single heatmap |
| draw-method | Draw a list of heatmaps |
| EnrichedHeatmap | Constructor method for EnrichedHeatmap class |
| EnrichedHeatmap-class | Class for a single heatmap |
| EnrichedHeatmapList | Constructor method for EnrichedHeatmapList class |
| EnrichedHeatmapList-class | Class for a list of heatmaps |
| enriched_score | Enriched scores |
| extract_anno_enriched | Extarct enrichment annotation graphic as a separate plot |
| getSignalsFromList | Get signals from a list |
| makeWindows | Split regions into windows |
| normalizeToMatrix | Normalize associations between genomic signals and target regions into a matrix |
| print.normalizedMatrix | Print normalized matrix |
| rbind.normalizedMatrix | Bind matrix by rows |
| show | Method dispatch page for show |
| show-method | Draw the single heatmap with default parameters |
| show-method | Draw a list of heatmaps with default parameters |
| [.normalizedMatrix | Subset normalized matrix by rows |