| ENCODExplorer-package | ENCODExplorer |
| clean_column | Clean a single column of the data.frame |
| clean_table | Clean a data.frame that was produced by extract_table |
| createDesign | Create a design for the files associated with the result of a queryEncode, fuzzySearch research or a 'data.table' from createDesign. |
| downloadEncode | downloadEncode is used to download a serie of files or datasets using their accession. |
| download_dt_file | Downloads all files inside a data.table. |
| download_single_file | download_single_file Downloads a single file and checks if md5 checksums match. |
| ENCODExplorer | ENCODExplorer |
| encode_df | Metadata from the ENCODE database in a R object. The tables were generated with the 'prepare_ENCODEdb' function. |
| export_ENCODEdb_matrix | Extract essential informations from a list of data.table in a 'list' of 'data.table's |
| extract_table | Extract a data.frame corresponding to a table in ENCODE database |
| fuzzySearch | Fuzzysearch is a searching function for a string or a list of string within the encode_df 'data.table'. For faster processing, pass encode_df object as database parameter. |
| get_encode_types | A list of known tables from ENCODE database. |
| get_schemas | Extract the schemas from ENCODE's github |
| prepare_ENCODEdb | Create the list of data.table for the tables in ENCODE |
| queryEncode | Produce a subset of data following predefined criteria |
| searchEncode | Simulate a query on ENCODE website and return the result as a 'data.frame' |
| searchToquery | Convert searchEncode output in queryEncode output. |
| shinyEncode | Launch a shiny interface for ENCODExplorer |