| EGSEA-package | Ensemble of Gene Enrichment Analysis (EGSEA) |
| $-method | The EGSEAResults class |
| $-method | The GSCollectionIndex class |
| buildCustomIdx | Functions to create gene set collection indexes for EGSEA |
| buildCustomIdx,egsea-index | Functions to create gene set collection indexes for EGSEA |
| buildGeneSetDBIdx | Functions to create gene set collection indexes for EGSEA |
| buildGeneSetDBIdx,egsea-index | Functions to create gene set collection indexes for EGSEA |
| buildGMTIdx | Functions to create gene set collection indexes for EGSEA |
| buildGMTIdx,egsea-index | Functions to create gene set collection indexes for EGSEA |
| buildIdx | Functions to create gene set collection indexes for EGSEA |
| buildIdx,egsea-index | Functions to create gene set collection indexes for EGSEA |
| buildKEGGIdx | Functions to create gene set collection indexes for EGSEA |
| buildKEGGIdx,egsea-index | Functions to create gene set collection indexes for EGSEA |
| buildMSigDBIdx | Functions to create gene set collection indexes for EGSEA |
| buildMSigDBIdx,egsea-index | Functions to create gene set collection indexes for EGSEA |
| EGSEA | Ensemble of Gene Enrichment Analysis (EGSEA) |
| egsea | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea,egsea-main | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea.base | EGSEA auxiliary functions |
| egsea.base,egsea-aux | EGSEA auxiliary functions |
| egsea.cnt | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea.cnt,egsea-main | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea.combine | EGSEA auxiliary functions |
| egsea.combine,egsea-aux | EGSEA auxiliary functions |
| egsea.logo | EGSEA auxiliary functions |
| egsea.logo,egsea-aux | EGSEA auxiliary functions |
| egsea.ma | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea.ora | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea.ora,egsea-main | Core functions to perform ensemble of gene set enrichment analysis (EGSEA) |
| egsea.sort | EGSEA auxiliary functions |
| egsea.sort,egsea-aux | EGSEA auxiliary functions |
| EGSEAResults | The EGSEAResults class |
| EGSEAResults-class | The EGSEAResults class |
| generateReport | The EGSEAResults class |
| generateReport-method | The EGSEAResults class |
| getlimmaResults | The EGSEAResults class |
| getlimmaResults-method | The EGSEAResults class |
| getSetByID | The GSCollectionIndex class |
| getSetByID-method | The GSCollectionIndex class |
| getSetByName | The GSCollectionIndex class |
| getSetByName-method | The GSCollectionIndex class |
| getSetScores | The EGSEAResults class |
| getSetScores-method | The EGSEAResults class |
| GSCollectionIndex | The GSCollectionIndex class |
| GSCollectionIndex-class | The GSCollectionIndex class |
| limmaTopTable | The EGSEAResults class |
| limmaTopTable-method | The EGSEAResults class |
| plotBars | The EGSEAResults class |
| plotBars-method | The EGSEAResults class |
| plotGOGraph | The EGSEAResults class |
| plotGOGraph-method | The EGSEAResults class |
| plotHeatmap | The EGSEAResults class |
| plotHeatmap-method | The EGSEAResults class |
| plotMethods | The EGSEAResults class |
| plotMethods-method | The EGSEAResults class |
| plotPathway | The EGSEAResults class |
| plotPathway-method | The EGSEAResults class |
| plotSummary | The EGSEAResults class |
| plotSummary-method | The EGSEAResults class |
| plotSummaryHeatmap | The EGSEAResults class |
| plotSummaryHeatmap-method | The EGSEAResults class |
| show-method | The EGSEAResults class |
| show-method | The GSCollectionIndex class |
| showSetByID | The EGSEAResults class |
| showSetByID-method | The EGSEAResults class |
| showSetByName | The EGSEAResults class |
| showSetByName-method | The EGSEAResults class |
| summary-method | The EGSEAResults class |
| summary-method | The GSCollectionIndex class |
| topSets | The EGSEAResults class |
| topSets-method | The EGSEAResults class |