| bwmc | Basic utilities for the EBcoexpress package |
| crit.fun | Basic utilities for the EBcoexpress package |
| ebCoexpressFullTCAECM | Functions to run single-study analyses |
| ebCoexpressMeta | A function for DC meta-analysis that combines individual study analyses |
| ebCoexpressOneStep | Functions to run single-study analyses |
| ebCoexpressZeroStep | Functions to run single-study analyses |
| fiftyGenes | The fiftyGenes expression matrix |
| initializeHP | Initializing Hyperparameters for EM |
| makeMyD | A function to convert the X expression matrix into the D correlation matrix |
| priorDiagnostic | Visual diagnostic for the EBcoexpress prior |
| rankMyGenes | A function to rank the genes by the number of DC pairs in which they appear |
| showNetwork | A function for looking at the co-expression among a small group of genes |
| showPair | A function for looking at a pair's differential co-expression |