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| DriverNet-package | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer |
| actualEvents | Actual events covered by driver mutations |
| actualEvents-method | Class '"DriverNetResult"' |
| computeDrivers | Compute a list of driver mutations |
| computeRandomizedResult | Randomly compute lists of driver mutations |
| DriverNet | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer |
| DriverNetResult-class | Class '"DriverNetResult"' |
| drivers | List of driver mutations identified by DriverNet |
| drivers-method | Class '"DriverNetResult"' |
| getPatientOutlierMatrix | Compute the patient outlier matrix |
| preprocessMatrices | Remove unnecessary entries from matrices |
| resultSummary | Summarize result for drivers ranking. |
| sampleDriversList | Sample DriverNet result |
| sampleGeneNames | Sample gene names |
| sampleInfluenceGraph | Sample influence graph |
| samplePatientExpressionMatrix | Sample patient expression matrix |
| samplePatientMutationMatrix | Sample patient mutation matrix |
| samplePatientOutlierMatrix | Sample patient outlier matrix |
| sampleRandomDriversResult | Sample Result from computeRandomizedResult |
| totalEvents | Total number of events in the data |
| totalEvents-method | Class '"DriverNetResult"' |