| DMRcate-package | DMR calling from bisulphite sequencing and Illumina array data |
| cpg.annotate | Annotate CpGs with their chromosome position and test statistic |
| DMR.plot | Plotting DMRs |
| DMRcate | DMR calling from bisulphite sequencing and Illumina array data |
| dmrcate | DMR identification |
| extractRanges | Create GRanges object from 'dmrcate' output. |
| plot | Plotting DMRs |
| rmSNPandCH | Filter probes |