| accessors | Accessors for a "DEXUSResult". |
| as.data.frame-method | Class '"DEXUSResult"' |
| conditionSizes | Accessors for a "DEXUSResult". |
| conditionSizes-method | Class '"DEXUSResult"' |
| countsBottomly | RNA-Seq data of two mice strains. |
| countsGilad | RNA-Seq data of humans, chimpanzees and rhesus macaques. |
| countsLi | RNA-Seq data of the developmental zones of maize leaves. |
| countsMontgomery | RNA-Seq data of 60 European HapMap individuals. |
| countsPickrell | RNA-Seq data of 69 Nigerian HapMap individuals. |
| dexss | Detection of Differential Expression in a semi-supervised Setting |
| DEXSS, | Detection of Differential Expression in a semi-supervised Setting |
| dexus | Detection of Differential Expression in an Unsupervised Setting |
| DEXUS, | Detection of Differential Expression in an Unsupervised Setting |
| dexus.parallel | A parallel version of DEXUS. |
| DEXUSResult-class | Class '"DEXUSResult"' |
| dispersions | Accessors for a "DEXUSResult". |
| dispersions-method | Class '"DEXUSResult"' |
| getSizeNB | Maximum-likelihood and maximum-a-posteriori estimators for the negative binomial distribution. |
| INI | I/NI filtering of a DEXUS result. |
| INI-method | Class '"DEXUSResult"' |
| INICalls | Accessors for a "DEXUSResult". |
| INICalls-method | Class '"DEXUSResult"' |
| INIThreshold | Accessors for a "DEXUSResult". |
| INIThreshold-method | Class '"DEXUSResult"' |
| INIThreshold-set | Set the I/NI threshold. |
| INIThreshold<- | Set the I/NI threshold. |
| INIThreshold<--method | Class '"DEXUSResult"' |
| INIValues | Accessors for a "DEXUSResult". |
| INIValues-method | Class '"DEXUSResult"' |
| inputData | Accessors for a "DEXUSResult". |
| inputData-method | Class '"DEXUSResult"' |
| logFC | Accessors for a "DEXUSResult". |
| logFC-method | Class '"DEXUSResult"' |
| means | Accessors for a "DEXUSResult". |
| means-method | Class '"DEXUSResult"' |
| normalizeData | Normalization of RNA-Seq count data. |
| normalizedData | Accessors for a "DEXUSResult". |
| normalizedData-method | Class '"DEXUSResult"' |
| params | Accessors for a "DEXUSResult". |
| params-method | Class '"DEXUSResult"' |
| plot | Visualization of a result of the DEXUS algorithm. |
| plot-method | Class '"DEXUSResult"' |
| posteriorProbs | Accessors for a "DEXUSResult". |
| posteriorProbs-method | Class '"DEXUSResult"' |
| pvals | Accessors for a "DEXUSResult". |
| pvals-method | Class '"DEXUSResult"' |
| responsibilities | Accessors for a "DEXUSResult". |
| responsibilities-method | Class '"DEXUSResult"' |
| sampleNames | Accessors for a "DEXUSResult". |
| sampleNames-method | Class '"DEXUSResult"' |
| show-method | Class '"DEXUSResult"' |
| sizeFactors | Accessors for a "DEXUSResult". |
| sizeFactors-method | Class '"DEXUSResult"' |
| sizeParameters | Accessors for a "DEXUSResult". |
| sizeParameters-method | Class '"DEXUSResult"' |
| sort | Sorting a DEXUS result. |
| sort-method | Class '"DEXUSResult"' |
| transcriptNames | Accessors for a "DEXUSResult". |
| transcriptNames-method | Class '"DEXUSResult"' |
| [-method | Class '"DEXUSResult"' |
| `[` | Subsetting a "DEXUSResult". |
| `[`-method | Subsetting a "DEXUSResult". |