| batch_correction | batch_correction |
| DeMixT | Deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms |
| DeMixT_DE | Estimates the proportions of mixed samples for each mixing component |
| DeMixT_GS | Estimates the proportions of mixed samples for each mixing component using profile likelihood gene selection |
| DeMixT_preprocessing | DeMixT_preprocessing |
| DeMixT_S2 | Deconvolves expressions of each individual sample for unknown component |
| detect_suspicious_sample_by_hierarchical_clustering_2comp | detect_suspicious_sample_by_hierarchical_clustering_2comp |
| Optimum_KernelC | Kernel function for optimizing parameters and hidden variables in DeMixT |
| plot_dim | detect_suspicious_sample_by_hierarchical_clustering_2comp |
| plot_sd | detect_suspicious_sample_by_hierarchical_clustering_2comp |
| scale_normalization_75th_percentile | scale_normalization_75th_percentile |
| simulate_2comp | Function to simulate two-component test data |
| simulate_3comp | Function to simulate three-component mixed cell line test data |
| subset_sd | subset_sd |
| subset_sd_gene_remaining | subset_sd_gene_remaining |
| test.data.2comp | Simulated two-component test data |
| test.data.3comp | Simulated three-component mixed cell line test data |