Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

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Documentation for package ‘DeMixT’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

DeMixT	Deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
DeMixT_DE	Estimates the proportions of mixed samples for each mixing component
DeMixT_GS	Estimates the proportions of mixed samples for each mixing component using profile likelihood gene selection
DeMixT_S2	Deconvolves expressions of each individual sample for unknown component
Optimum_KernelC	Kernel function for optimizing parameters and hidden variables in DeMixT
simulate_2comp	Function to simulate two-component test data
simulate_3comp	Function to simulate three-component mixed cell line test data
test.data.2comp	Simulated two-component test data
test.data.3comp	Simulated three-component mixed cell line test data