| DEGexp | DEGexp: Identifying Differentially Expressed Genes from gene expression data |
| DEGexp2 | DEGexp2: Identifying Differentially Expressed Genes from gene expression data |
| DEGseq | DEGseq: Identify Differentially Expressed Genes from RNA-seq data |
| GeneExpExample1000 | GeneExpExample1000 |
| GeneExpExample5000 | GeneExpExample5000 |
| getGeneExp | getGeneExp: Count the number of reads and calculate the RPKM for each gene |
| kidneyChr21.bed | kidneyChr21.bed |
| kidneyChr21Bowtie | kidneyChr21Bowtie |
| liverChr21.bed | liverChr21.bed |
| liverChr21Bowtie | liverChr21Bowtie |
| readGeneExp | readGeneExp: read gene expression values to a matrix |
| refFlatChr21 | refFlatChr21 |
| samWrapper | samWrapper: A Wrapper (with some modification) of the functions in the package samr to identify differentially expressed genes for the RNA-seq data from two groups of paired or unpaired samples. |