Efficient design and analysis of factorial two-colour microarray data

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Documentation for package ‘daMA’ version 1.52.0

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analyseMA ANALYSIS OF FACTORIAL MICROARRAY EXPERIMENTS
cinfo Vector indexing the matrix cmat
cinfoB.AB Vector indexing the matrix cmatB.AB
cmat Contrast matrix describing the experimental questions
cmatB.AB Contrast matrix describing the experimental questions
core Internal function of analyseMA
data.3x2 3x2 microarray data
designMA DESIGN OF FACTORIAL MICROARRAY EXPERIMENTS
designs.basic Basic designs for two-colour factorial 3 x 2 microarray data
designs.composite Composite designs for two-colour factorial 3 x 2 microarray data
id.3x2 A vector of length 30012 containing numeric identifiers of the genes from the microarray dataset data.3x2.