| cytoHDBMW | Example of processed dimensionally reduced flow cytometry (marker median intensities) Bodenmiller_BCR_XL_flowSet() expression dataset from HDCytoData Bioconductor data package. |
| CytoK | CytoK |
| CytoK-class | the CytoK class |
| CytoKalpha | Generic function that returns the CytoK level of significance (alpha) Given a CytoK object, this function returns the CytoK alpha |
| CytoKalpha-method | Generic function that returns the CytoK level of significance (alpha) Given a CytoK object, this function returns the CytoK alpha |
| CytoKData | Generic function that returns the CytoK Data |
| CytoKData-method | Generic function that returns the CytoK Data |
| CytoKDEData | Differentially expressed data by cytoKernel |
| CytoKDEfeatures | Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features |
| CytoKDEfeatures-method | Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features |
| CytoKFeatures | Generic function that returns the CytoK features |
| CytoKFeatures-method | Generic function that returns the CytoK features |
| CytoKFeaturesOrdered | Generic function that returns the ordered CytoK features |
| CytoKFeaturesOrdered-method | Generic function that returns the ordered CytoK features |
| CytoKFeatureVars | Generic function that returns the CytoK Feature Vars |
| CytoKFeatureVars-method | Generic function that returns the CytoK Feature Vars |
| CytoKProc | CytoKProc |
| data.frameORSummarizedExperiment-class | S4 Class union |
| plotCytoK | Heatmap of the differentially expressed data with features on the rows and samples (group factors) as the columns from 'CytoK' and 'CytoKDEData' function. |
| vectorORNull-class | S4 Class union |