| coRegnet-package | coRegnet : inference and interrogation co-regulation networks |
| activators | Interogate a coregnet object. |
| activators-method | Interogate a coregnet object. |
| addCooperativeEvidences | Integration of regulatory evidences. |
| addCooperativeEvidences-method | Integration of regulatory evidences. |
| addEvidences | Integration of regulatory evidences. |
| addEvidences-method | Integration of regulatory evidences. |
| CHEA_sub | Human Transcription Factor data and Bladder cancer dataset. |
| CIT_BLCA_CNV | Human Transcription Factor data and Bladder cancer dataset. |
| CIT_BLCA_EXP | Human Transcription Factor data and Bladder cancer dataset. |
| CIT_BLCA_Subgroup | Human Transcription Factor data and Bladder cancer dataset. |
| coRegnet | coRegnet : inference and interrogation co-regulation networks |
| coregnet | Initialize a co-regulatory network object. |
| coregnet-class | Class coregnet - Specifying the structure of the network used throughout the package. |
| coregnetToDataframe | Summaries and info coregnet |
| coregnetToDataframe-method | Summaries and info coregnet |
| coregnetToList | Summaries and info coregnet |
| coregnetToList-method | Summaries and info coregnet |
| coregnetToList.CoRegNet | Summaries and info coregnet |
| coregnetToList.coregnet | Summaries and info coregnet |
| coregulators | Extract all co-regulators of a regulatory network. |
| coregulators-method | Extract all co-regulators of a regulatory network. |
| dim-method | Summaries and info coregnet |
| discretizeExpressionData | Three-value discretization of gene expression data. |
| display | Display a shiny interactive web interface to |
| ENCODE_sub | Human Transcription Factor data and Bladder cancer dataset. |
| HIPPIE_sub | Human Transcription Factor data and Bladder cancer dataset. |
| hLICORN | Hybrid Learning of co-operative regulation network. |
| HumanTF | List of Human Transcription Factors. |
| HumanTF_entrezgene | List of Human Transcription Factors. |
| length-method | Summaries and info coregnet |
| masterRegulator | Identify phenotype related Master Regulators. |
| masterRegulator-method | Identify phenotype related Master Regulators. |
| print-method | Summaries and info coregnet |
| refine | Refine an inferred regulatory network using external evidence. |
| refine-method | Refine an inferred regulatory network using external evidence. |
| regulatorInfluence | Regulator Influence, estimating the sample specific activity of Transcription Factors. |
| regulatorInfluence-method | Regulator Influence, estimating the sample specific activity of Transcription Factors. |
| regulators | Interogate a coregnet object. |
| regulators-method | Interogate a coregnet object. |
| repressors | Interogate a coregnet object. |
| repressors-method | Interogate a coregnet object. |
| show-method | Summaries and info coregnet |
| STRING_sub | Human Transcription Factor data and Bladder cancer dataset. |
| summary | Summaries and info coregnet |
| summary-method | Summaries and info coregnet |
| targets | Interogate a coregnet object. |
| targets-method | Interogate a coregnet object. |