| CopywriteR | CopywriteR: ENhanced COpy number Detection from Exome Reads |
| list.files | CopywriteR: ENhanced COpy number Detection from Exome Reads |
| plotCNA | CopywriteR: ENhanced COpy number Detection from Exome Reads |
| preCopywriteR | CopywriteR: DNA copy number detection from off-target sequence data |