Gene Set Analysis of (Rare) Copy Number Variants

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Documentation for package ‘cnvGSA’ version 1.24.0

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cnvGSA-package Gene-set Analysis of (Rare) Copy Number Variants
cnvData.ls Class '"CnvGSAInput"'
cnvData.ls-method Class '"CnvGSAInput"'
cnvData.ls<- Class '"CnvGSAInput"'
cnvData.ls<--method Class '"CnvGSAInput"'
cnvGSA Gene-set Analysis of (Rare) Copy Number Variants
cnvGSAgsTables Creates the gene-set tables for each gene-set.
cnvGSAIn Creating the input S4 object needed to run the script.
CnvGSAInput Class '"CnvGSAInput"'
CnvGSAInput-class Class '"CnvGSAInput"'
cnvGSAlogRegTest Performing the logistic regression tests on the CNV data.
CnvGSAOutput Class '"CnvGSAOutput"'
CnvGSAOutput-class Class '"CnvGSAOutput"'
config.ls Class '"CnvGSAInput"'
config.ls-method Class '"CnvGSAInput"'
config.ls<- Class '"CnvGSAInput"'
config.ls<--method Class '"CnvGSAInput"'
f.enrFiles Prepares the files for the enrichment maps.
f.makeViz Creates the plots from the CnvGSAOutput data.
f.readConfig Reading in the config file.
geneID.ls Class '"CnvGSAInput"'
geneID.ls-method Class '"CnvGSAInput"'
geneID.ls<- Class '"CnvGSAInput"'
geneID.ls<--method Class '"CnvGSAInput"'
gsData.ls Class '"CnvGSAInput"'
gsData.ls-method Class '"CnvGSAInput"'
gsData.ls-method Class '"CnvGSAOutput"'
gsData.ls<- Class '"CnvGSAInput"'
gsData.ls<--method Class '"CnvGSAInput"'
gsTables.ls Class '"CnvGSAOutput"'
gsTables.ls-method Class '"CnvGSAOutput"'
params.ls Class '"CnvGSAInput"'
params.ls-method Class '"CnvGSAInput"'
params.ls<- Class '"CnvGSAInput"'
params.ls<--method Class '"CnvGSAInput"'
phData.ls Class '"CnvGSAInput"'
phData.ls-method Class '"CnvGSAInput"'
phData.ls-method Class '"CnvGSAOutput"'
phData.ls<- Class '"CnvGSAInput"'
phData.ls<--method Class '"CnvGSAInput"'
res.ls Class '"CnvGSAOutput"'
res.ls-method Class '"CnvGSAOutput"'