| CNOlistPB | Toy data |
| computeScoreDT | Compute the score of a model/data (time-course) set using a bitString to cut the model. |
| convert2array | Converts the output of simulatorDT to a 3D array for other functions |
| cutAndPlotResultsDT | Plot the results of a time-course optimization |
| gaBinaryDT | Genetic algorithm for optimizing models using multiple time-points |
| getFitDT | The optimization function that finds the scaling factor for the boolean simulation |
| modelPB | modelPB |
| simulatorDT | Discrete time simulation of a boolean model |