| Clomial-package | Fits a binomial model to data from multiple samples of a single tumor to infer its clonal decomposition. |
| breastCancer | Breast cancer data for clonal decomposition. |
| choose.best | Chooses the best trained Clomial model. |
| Clomial | Fits several binomial models to data from multiple samples of a single tumor. |
| Clomial.generate.data | Generates simulated data to test performance of Clomial algorithm. |
| Clomial.iterate | Runs EM iterations until convergence of the Clomial model. |
| Clomial.likelihood | Computes the complete data log-likelihood of a Clomial model. |
| Clomial1000 | Pre-computed results of Clomial. |
| compute.bic | Computes BIC for a Clomial model. |
| compute.errors | Computes the error of a Clomial model. |