This package classifies putative polyadenylation sites as true or false/internally oligodT primed

Documentation for package ‘cleanUpdTSeq’ version 1.18.0

cleanUpdTSeq-package	This package classifies putative polyadenylation sites.
$-method	Class '"PASclassifier"'
$-method	Class '"featureVector"'
$-method	Class '"modelInfo"'
$-method	Class '"naiveBayes"'
$<--method	Class '"PASclassifier"'
$<--method	Class '"featureVector"'
$<--method	Class '"modelInfo"'
$<--method	Class '"naiveBayes"'
BED2GRangesSeq	BED2GRangesSeq
buildClassifier	get Naive Bayes Classifier
buildFeatureVector	buildFeatureVector
classifier	An object of class "naiveBayes" generated from data.NaiveBayes
cleanUpdTSeq	This package classifies putative polyadenylation sites.
data.NaiveBayes	Training Data
featureVector	Class '"featureVector"'
featureVector-class	Class '"featureVector"'
getDownstreamSequence	getDownstreamSequence
getUpstreamSequence	Get upstream sequences of the putative pA site
modelInfo	Class '"modelInfo"'
modelInfo-class	Class '"modelInfo"'
naiveBayes	Class '"naiveBayes"'
naiveBayes-class	Class '"naiveBayes"'
PASclassifier	Class '"PASclassifier"'
PASclassifier-class	Class '"PASclassifier"'
predictTestSet	predictTestSet