| bnbc-package | Bandwise normalization and batch correction of Hi-C data |
| band | Get Band |
| band<- | Get Band |
| bnbc | Normalize Contact Matrices with BNBC |
| boxSmoother | Smoothing Operations |
| cgApply | Apply-type methods |
| cgBandApply | Apply-type methods |
| cgEx | Sample chr22 Data |
| colData-method | Class '"ContactGroup"' |
| colData<--method | Class '"ContactGroup"' |
| ContactGroup | Class '"ContactGroup"' |
| ContactGroup-class | Class '"ContactGroup"' |
| contacts | Class '"ContactGroup"' |
| contacts<- | Class '"ContactGroup"' |
| dim-method | Class '"ContactGroup"' |
| distanceIdx | Class '"ContactGroup"' |
| dropGroupZeros | Group Zero Operations |
| gaussSmoother | Smoothing Operations |
| getBandIdx | Get Band Indices |
| getBandMatrix | Get Band Matrix |
| getGroupZeros | Group Zero Operations |
| librarySize | Class '"ContactGroup"' |
| logCPM | Class '"ContactGroup"' |
| rowData-method | Class '"ContactGroup"' |
| rowData<--method | Class '"ContactGroup"' |
| show-method | Class '"ContactGroup"' |
| [-method | Class '"ContactGroup"' |