| .defaultScalarArguments | Define the default arguments |
| .defaultScalarArguments-method | Agglomerative nesting |
| .defaultScalarArguments-method | Clustering Large Applications |
| .defaultScalarArguments-method | Divisive analysis clustering |
| .defaultScalarArguments-method | Hierarchical clustering |
| .defaultScalarArguments-method | The HierarchicalParam class |
| .defaultScalarArguments-method | Partitioning around medoids |
| .defaultScalarArguments-method | Define the default arguments |
| .extractScalarArguments | Define the default arguments |
| .showScalarArguments | Define the default arguments |
| AffinityParam | Affinity propogation |
| AffinityParam-class | Affinity propogation |
| AgnesParam | Agglomerative nesting |
| AgnesParam-class | Agglomerative nesting |
| approxSilhouette | Approximate silhouette width |
| BlusterParam-class | The BlusterParam class |
| bootstrapStability | Assess cluster stability by bootstrapping |
| centers | The FixedNumberParam class |
| centers-method | The FixedNumberParam class |
| centers<- | The FixedNumberParam class |
| centers<--method | The FixedNumberParam class |
| ClaraParam | Clustering Large Applications |
| ClaraParam-class | Clustering Large Applications |
| clusterRMSD | Compute the RMSD per cluster |
| clusterRows | Cluster rows of a matrix |
| clusterRows-method | Affinity propogation |
| clusterRows-method | Agglomerative nesting |
| clusterRows-method | Clustering Large Applications |
| clusterRows-method | Density-based clustering with DBSCAN |
| clusterRows-method | Divisive analysis clustering |
| clusterRows-method | Hierarchical clustering |
| clusterRows-method | K-means clustering |
| clusterRows-method | Mini-batch k-means clustering |
| clusterRows-method | Graph-based clustering |
| clusterRows-method | Partitioning around medoids |
| clusterRows-method | Clustering with self-organizing maps |
| clusterRows-method | Two step clustering with vector quantization |
| clusterSweep | Clustering parameter sweeps |
| compareClusterings | Compare pairs of clusterings |
| DbscanParam | Density-based clustering with DBSCAN |
| DbscanParam-class | Density-based clustering with DBSCAN |
| DianaParam | Divisive analysis clustering |
| DianaParam-class | Divisive analysis clustering |
| FixedNumberParam-class | The FixedNumberParam class |
| HclustParam | Hierarchical clustering |
| HclustParam-class | Hierarchical clustering |
| HierarchicalParam-class | The HierarchicalParam class |
| KmeansParam | K-means clustering |
| KmeansParam-class | K-means clustering |
| KNNGraphParam | Graph-based clustering |
| KNNGraphParam-class | Graph-based clustering |
| linkClusters | Create a graph between different clusterings |
| linkClustersMatrix | Create a graph between different clusterings |
| makeKNNGraph | Build a nearest-neighbor graph |
| makeSNNGraph | Build a nearest-neighbor graph |
| MbkmeansParam | Mini-batch k-means clustering |
| MbkmeansParam-class | Mini-batch k-means clustering |
| mergeCommunities | Merge communities from graph-based clustering |
| neighborPurity | Compute neighborhood purity |
| neighborsToKNNGraph | Build a nearest-neighbor graph |
| neighborsToSNNGraph | Build a nearest-neighbor graph |
| nestedClusters | Map nested clusterings |
| NNGraphParam | Graph-based clustering |
| NNGraphParam-class | Graph-based clustering |
| pairwiseModularity | Compute pairwise modularity |
| pairwiseRand | Compute pairwise Rand indices |
| PamParam | Partitioning around medoids |
| PamParam-class | Partitioning around medoids |
| show-method | Affinity propogation |
| show-method | Agglomerative nesting |
| show-method | The BlusterParam class |
| show-method | Clustering Large Applications |
| show-method | Density-based clustering with DBSCAN |
| show-method | Divisive analysis clustering |
| show-method | The FixedNumberParam class |
| show-method | Hierarchical clustering |
| show-method | The HierarchicalParam class |
| show-method | K-means clustering |
| show-method | Mini-batch k-means clustering |
| show-method | Graph-based clustering |
| show-method | Partitioning around medoids |
| show-method | Clustering with self-organizing maps |
| show-method | Two step clustering with vector quantization |
| SNNGraphParam | Graph-based clustering |
| SNNGraphParam-class | Graph-based clustering |
| SomParam | Clustering with self-organizing maps |
| SomParam-class | Clustering with self-organizing maps |
| TwoStepParam | Two step clustering with vector quantization |
| TwoStepParam-class | Two step clustering with vector quantization |
| updateObject-method | Hierarchical clustering |
| updateObject-method | K-means clustering |
| [[-method | The BlusterParam class |
| [[-method | Hierarchical clustering |
| [[<--method | The BlusterParam class |