| BiRewire-package | The BiRewire package |
| BiRewire | The BiRewire package |
| birewire.analysis.bipartite | Analysis of Jaccard similarity trends across switching steps. |
| birewire.analysis.dsg | Analysis of Jaccard similarity trends across switching steps. |
| birewire.analysis.undirected | Analysis of Jaccard similarity trends across switching steps. |
| birewire.bipartite.from.incidence | Converts an incidence matrix into a bipartite graph. |
| birewire.build.dsg | Transform a dsg object in a SIF file. |
| birewire.induced.bipartite | Transform a SIF data frame into a dsg object (a list of positive and negative incidence matrix). |
| birewire.load.dsg | Read a SIF file from a given path |
| birewire.rewire.bipartite | Efficient rewiring of bipartite graphs |
| birewire.rewire.bipartite.and.projections | Analysis and rewiring function processing a bipartite graphs and its two projections |
| birewire.rewire.dsg | Efficient rewiring of directed signed graphs |
| birewire.rewire.undirected | Efficient rewiring of undirected graphs |
| birewire.sampler.bipartite | Efficient generation of a null model for a given bipartite graph |
| birewire.sampler.dsg | Efficient generation of a null model for a given dsg. |
| birewire.sampler.undirected | Efficient generation of a null model for a given undirected graph |
| birewire.similarity | Compute the Jaccard similarity index between two binary matrices with the same number of non-null entries and the sam row- and column-wise sums. |
| birewire.similarity.dsg | Compute the Jaccard similarity index between dsg. |
| birewire.slum.to.sparseMatrix | The function transforms a triplet sparse matrix from slum package to a Matrix sparse matrix. |
| birewire.visual.monitoring.bipartite | Visual monitoring of the Markov chain underlying the SA for directed graphs. |
| birewire.visual.monitoring.dsg | Visual monitoring of the Markov chain underlying the SA for dsgs. |
| birewire.visual.monitoring.undirected | Visual monitoring of the Markov chain underlying the SA for undirected graphs. |
| BRCA_binary_matrix | TCGA Brest Cancer data |
| test_dsg | Tool example of dsg |