| biosvd-package | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling |
| apply | The Eigensystem class |
| assayColorMap | The EigensystemPlotParam class |
| assayColorMap<- | Set assayColorMap for object of EigensystemPlotParam |
| assaycorrelations | The Eigensystem class |
| assayMatrix | The Eigensystem class |
| biosvd | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling |
| colorIdFeatures | The Eigensystem class |
| compute | Compute the eigensystem for a feature by assay matrix |
| compute-method | Compute the eigensystem for a feature by assay matrix |
| contrast | The EigensystemPlotParam class |
| contrast<- | Set contrast for object of EigensystemPlotParam |
| eigenassays | The Eigensystem class |
| eigenexpressions | The Eigensystem class |
| eigenfeatures | The Eigensystem class |
| Eigensystem | The Eigensystem class |
| Eigensystem-class | The Eigensystem class |
| EigensystemPlotParam | The EigensystemPlotParam class |
| EigensystemPlotParam-class | The EigensystemPlotParam class |
| entropy | The Eigensystem class |
| exclude | Excludes specified eigenfeatures/eigenassays from the data |
| exclude-method | Excludes specified eigenfeatures/eigenassays from the data |
| excludeEigenfeatures | The Eigensystem class |
| featureColorMap | The EigensystemPlotParam class |
| featureColorMap<- | Set featureColorMap for object of EigensystemPlotParam |
| featurecorrelations | The Eigensystem class |
| featureMatrix | The Eigensystem class |
| figure | The EigensystemPlotParam class |
| figure<- | Set figure for object of EigensystemPlotParam |
| filenames | The EigensystemPlotParam class |
| filenames<- | Set filenames for object of EigensystemPlotParam |
| fractions | The Eigensystem class |
| HeLaData | Human HeLa Cell Cycle Expression |
| matrix | The Eigensystem class |
| negativeValues | The EigensystemPlotParam class |
| negativeValues<- | Set negativeValues for object of EigensystemPlotParam |
| palette | The EigensystemPlotParam class |
| palette<- | Set palette for object of EigensystemPlotParam |
| path | The EigensystemPlotParam class |
| path<- | Set path for object of EigensystemPlotParam |
| plot | Generate visualizations of the eigensystem |
| plot-method | Generate visualizations of the eigensystem |
| plots | The EigensystemPlotParam class |
| plots<- | Set plots for object of EigensystemPlotParam |
| prefix | The EigensystemPlotParam class |
| prefix<- | Set prefix for object of EigensystemPlotParam |
| project | Projects the data onto one or two eigenfeatures and eigenassays |
| project-method | Projects the data onto one or two eigenfeatures and eigenassays |
| report | Creates a report of the eigensystem |
| report-method | Creates a report of the eigensystem |
| show-method | The Eigensystem class |
| show-method | The EigensystemPlotParam class |
| signMatrix | The Eigensystem class |
| StarvationData | Human HeLa Cell Cycle Expression |
| whichAssays | The EigensystemPlotParam class |
| whichAssays<- | Set whichAssays for object of EigensystemPlotParam |
| whichEigenassays | The EigensystemPlotParam class |
| whichEigenassays<- | Set whichEigenassays for object of EigensystemPlotParam |
| whichEigenfeatures | The EigensystemPlotParam class |
| whichEigenfeatures<- | Set whichEigenfeatures for object of EigensystemPlotParam |
| whichFeatures | The EigensystemPlotParam class |
| whichFeatures<- | Set whichFeatures for object of EigensystemPlotParam |
| whichPolarAxes | The EigensystemPlotParam class |
| whichPolarAxes<- | Set whichPolarAxes for object of EigensystemPlotParam |
| YeastData | Yeast Cell Cycle Expression |