Copy Number study and Segmentation for multivariate biological data

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Documentation for package ‘biomvRCNS’ version 1.38.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

biomvRCNS-class	Class '"biomvRCNS"'
biomvRGviz	Plot segmentation result using Gviz
biomvRhsmm	Estimating the most likely state sequence using Hidden Semi Markov Model
biomvRmgmr	Batch process multiple sequences and samples using max-gap-min-run algorithm for 2 states segmentation
biomvRseg	Homogeneous segmentation of multi-sample genomic data
coriell	Array CGH data set of Coriell cell lines
encodeTP53	mapped RNA-seq data from ENCODE
hsmmRun	Estimating the most likely state sequence using Hidden Semi Markov Model
maxGapminRun	Max-gap-min-run algorithm for 2 states segmentation
plot-method	Class '"biomvRCNS"'
regionSegAlphaNB	Estimate matrix of dispersion parameter alpha (size) used in 'regionSegCost' for negative binomial distributed 'x'.
regionSegCost	Regional segmentation cost matrix
show-method	Class '"biomvRCNS"'
simSegData	Simulate exemplary segmentation data.
sojournAnno	Estimate sojourn distribution parameters from posterior information like annotation data
splitFarNeighbour	Split segments if long gaps exist between feature positions
variosm	Differential methylation data from sequencing