| Biocannopkg | Link to packages on Bioconductor, CRAN and GitHub |
| Biocexptpkg | Link to packages on Bioconductor, CRAN and GitHub |
| Biocpkg | Link to packages on Bioconductor, CRAN and GitHub |
| CRANpkg | Link to packages on Bioconductor, CRAN and GitHub |
| doc_date | Specify Rmarkdown document metadata |
| Githubpkg | Link to packages on Bioconductor, CRAN and GitHub |
| html_document | Use Bioconductor style to format R Markdown HTML output |
| html_document2 | Use Bioconductor style to format R Markdown HTML output |
| latex | Use Bioconductor styles to format LaTeX vignettes |
| latex2 | Use Bioconductor styles to format LaTeX vignettes |
| markdown | Use Bioconductor CSS style to format HTML vignettes |
| md_document | Enable BiocStyle macros and a hyperlinked TOC in markdown output |
| output | Output format of an R Markdown document |
| pdf_document | Use Bioconductor style to format R Markdown PDF output |
| pdf_document2 | Use Bioconductor style to format R Markdown PDF output |
| pkg_ver | Specify Rmarkdown document metadata |
| Rpackage | Link to packages on Bioconductor, CRAN and GitHub |