Nearest Neighbor Detection for Bioconductor Packages

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Documentation for package ‘BiocNeighbors’ version 1.6.0

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AnnoyIndex The AnnoyIndex class
AnnoyIndex-class The AnnoyIndex class
AnnoyIndex_path The AnnoyIndex class
AnnoyIndex_search_mult The AnnoyIndex class
AnnoyParam The AnnoyParam class
AnnoyParam-class The AnnoyParam class
AnnoyParam_directory The AnnoyParam class
AnnoyParam_ntrees The AnnoyParam class
AnnoyParam_search_mult The AnnoyParam class
BiocNeighborIndex-class The BiocNeighborIndex class
BiocNeighborParam-class The BiocNeighborParam class
BiocNeighbors-algorithms Neighbor search algorithms
BiocNeighbors-raw-index Reporting raw indices
BiocNeighbors-ties Handling tied distances
bndata The BiocNeighborIndex class
bndata-method The BiocNeighborIndex class
bndistance The BiocNeighborIndex class
bndistance-method The BiocNeighborIndex class
bndistance-method The BiocNeighborParam class
bnorder The BiocNeighborIndex class
bnorder-method The BiocNeighborIndex class
buildAnnoy Build an Annoy index
buildExhaustive Prepare data for an exhaustive search
buildHnsw Build a HNSW index
buildIndex Build a nearest-neighbor index
buildIndex-method Build a nearest-neighbor index
buildKmknn Pre-cluster points with k-means
buildVptree Build a VP tree
dim-method The BiocNeighborIndex class
dimnames-method The BiocNeighborIndex class
ExhaustiveIndex The ExhaustiveIndex class
ExhaustiveIndex-class The ExhaustiveIndex class
ExhaustiveParam The ExhaustiveParam class
ExhaustiveParam-class The ExhaustiveParam class
findAnnoy Find nearest neighbors
findExhaustive Find nearest neighbors
findHnsw Find nearest neighbors
findKmknn Find nearest neighbors
findKNN Find k-nearest neighbors
findKNN-method Find k-nearest neighbors
findKNN-methods Find nearest neighbors
findNeighbors Find all neighbors in range
findNeighbors-method Find all neighbors in range
findVptree Find nearest neighbors
HnswIndex The HnswIndex class
HnswIndex-class The HnswIndex class
HnswIndex_ef_search The HnswIndex class
HnswIndex_path The HnswIndex class
HnswParam The HnswParam class
HnswParam-class The HnswParam class
HnswParam_directory The HnswParam class
HnswParam_ef_construction The HnswParam class
HnswParam_ef_search The HnswParam class
HnswParam_nlinks The HnswParam class
KmknnIndex The KmknnIndex class
KmknnIndex-class The KmknnIndex class
KmknnIndex_cluster_centers The KmknnIndex class
KmknnIndex_cluster_info The KmknnIndex class
KmknnParam The KmknnParam class
KmknnParam-class The KmknnParam class
KmknnParam_kmeans_args The KmknnParam class
queryAnnoy Query nearest neighbors
queryExhaustive Query nearest neighbors
queryHnsw Query nearest neighbors
queryKmknn Query nearest neighbors
queryKNN Query k-nearest neighbors
queryKNN-method Query k-nearest neighbors
queryKNN-methods Query nearest neighbors
queryNeighbors Query all neighbors
queryNeighbors-method Query all neighbors
queryVptree Query nearest neighbors
rangeFind-methods Find all neighbors in range
rangeFindExhaustive Find all neighbors in range
rangeFindKmknn Find all neighbors in range
rangeFindVptree Find all neighbors in range
rangeQuery-methods Query neighbors in range
rangeQueryExhaustive Query neighbors in range
rangeQueryKmknn Query neighbors in range
rangeQueryVptree Query neighbors in range
show-method The AnnoyIndex class
show-method The AnnoyParam class
show-method The BiocNeighborIndex class
show-method The BiocNeighborParam class
show-method The HnswIndex class
show-method The HnswParam class
show-method The KmknnIndex class
show-method The KmknnParam class
VptreeIndex The VptreeIndex class
VptreeIndex-class The VptreeIndex class
VptreeIndex_nodes The VptreeIndex class
VptreeParam The VptreeParam class
VptreeParam-class The VptreeParam class