| BEclear-package | Correct for batch effects in DNA methylation data |
| BEclear | Matrix prediction method using a Latent Factor Model |
| BEclear example data | Example data set for the BEclear-package |
| BEclearCorrected | Correct for batch effects in DNA methylation data |
| BEclearData | Example data set for the BEclear-package |
| calcMedians | Calculate median difference values |
| calcPvalues | Calculate p-values |
| calcScore | calculate batch effect score |
| calcSummary | Summarize median comparison and p-value calculation results |
| clearBEgenes | Prepare a data matrix for the BEclear function |
| correctBatchEffect | Correct a batch effect in DNA methylation data |
| countValuesToPredict | Count NA entries in a matrix |
| ex.corrected.data | Example matrix of corrected data for the BEclear-package |
| ex.data | Example data set for the BEclear-package |
| ex.samples | Example data set for the BEclear-package |
| findWrongValues | Find DNA methylation values out of the boundaries |
| makeBoxplot | produce simple predefined boxplot for methylation data |
| replaceWrongValues | Replace DNA methylation values out of the boundaries |