| clusterPlot |
Plot spatial cluster assignments. |
| enhanceFeatures |
Predict feature vectors from enhanced PCs. |
| exampleSCE |
Create minimal 'SingleCellExperiment' for documentation examples. |
| featurePlot |
Plot spatial gene expression. |
| getRDS |
Download a processed sample from our S3 bucket |
| mcmcChain |
Read MCMC chain associated with a BayesSpace clustering or enhancement |
| qPlot |
Tuning the choice of q (number of clusters) before running spatialCluster |
| qTune |
Tuning the choice of q (number of clusters) before running spatialCluster |
| readVisium |
Load a Visium spatial dataset as a SingleCellExperiment. |
| removeChain |
Read MCMC chain associated with a BayesSpace clustering or enhancement |
| spatialCluster |
Spatial clustering |
| spatialEnhance |
Enhance spot resolution |
| spatialPreprocess |
Preprocess a spatial dataset for BayesSpace |
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